Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_01415
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Entry
M634_01415 CDS
T02761
Name
(GenBank) diguanylate cyclase
KO
K20964
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
M634_01415
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
M634_01415
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Gene cluster
GFIT
Motif
Pfam:
EAL
FIST
FIST_C
GGDEF
HIND
Motif
Other DBs
NCBI-ProteinID:
AGQ89650
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Position
I:complement(279288..281774)
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AA seq
828 aa
AA seq
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MRAFSKRIHDVSQLNDFLVTSQLHPDKQYLVQILSTQSRECAVALAKAVLSMLPNAHVIG
HSTRNVILDGDIFTSGCLINLIEFDQTTLTSAVQAYSFSPDIDGGELKRSLQLQSNSQVI
ISFAVQIERRDYPLYQTFATENVRVSGGLAQTIEDGCWVLYQNQIYDNAVVAVALHSDTL
KTWTDAYSEWNPIGMPHKVTHAKGTRLYCLGERKALDVYKHYLADGHDVTINQLLSFPLY
RETLGRKEVCTVTELHADGSMSFDRPWCLGDEVQFCYNHPSLTLEQVRHGVVELAMHQPE
VVMIYNCASRLDFIDSSDEVQAFMDIAATFGSYCMGEIHGDIGQPEILHHSLTYLAMREG
DEVQSLNLPKPQVSASISPLFSLIRNAIGDLNHMNAHMGYQLDRQTRKLQESYRRDSRTG
LQNRVALQERLSYIDSDEHLLTLKLLNFSHINEKYGYRVGDQLLKDLSMHFTNRLRKRLG
MPAALQLYSIGVGEWAFVFKAEQSSETIKQHFTRFADAVEQTNFEPLGLREIDYLSISLC
GGLVSRRDFPSASPDELLLKGIEARRSGVRSNTHICNAKDIEVSEDVRKEQLGWLSCVSR
AILKQNIITYSQPIVHAYSHLPASQECLVRILEEDGTVIAPGRFLPIISDTHLYTRLSRH
MIRSTLHYMRDKKGDFSINLSPQDLLSDKTLMLLEHEISQLNDPTRIGLEVLESEQIKDY
GRMIEVCSHFRKLGARIIVDDFGSGYSNIDEILKLEPEVIKLDGSLIRDIDKDLKQRKIA
SQLVRLCQVFNAETVAEFVHNREVCKIAQDMGVDYLQGYYLGEPTRLF
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgcgagctttttccaaacggatccacgatgtaagtcagcttaatgactttttagtcact
tctcagttgcacccagataaacagtatttggtgcaaattttgtctacgcaatcgcgagaa
tgtgcggttgcgctcgccaaagcggttttgtcgatgttgcccaatgctcatgtcatcggt
cacagtactcgcaatgtaattttggatggcgacatttttacctctggctgcctcatcaac
ctgattgagtttgaccaaaccacgctaacgtctgccgtccaagcgtattctttctctccc
gatatagacggtggcgagctcaaacgttcgctgcagttacaaagcaactctcaagtcatc
atcagttttgccgtgcaaatcgaacgtcgtgattatcctttgtatcaaacttttgcgacc
gaaaacgtgcgagtgtctggtggattagcgcagaccatagaagacggctgttgggtgctc
tatcaaaaccagatatacgacaacgccgtagtggcagtggctttgcacagtgatactttg
aaaacttggacagacgcgtattccgagtggaacccaatcggcatgccgcacaaagtgacg
catgcgaaaggcacgcgcttgtattgcttaggagagcgtaaagccctcgatgtttataag
cattatcttgccgacggtcacgacgtgacgattaaccaattactcagtttcccgttgtat
cgagaaacgttggggcgcaaggaagtgtgtaccgtcacagaacttcacgccgatggaagc
atgagtttcgataggccgtggtgcctcggtgatgaggttcagttttgctataaccatcct
tctctgacgttagaacaagtgcgtcatggggtggttgaacttgccatgcatcagcctgaa
gtagtgatgatttacaactgtgcctcgcggttggattttattgatagcagcgatgaagtg
caggcgtttatggatattgccgcgacctttggcagctactgtatgggtgaaatacatggt
gacattggccagccagaaattcttcaccacagtttgacgtaccttgcgatgcgcgaagga
gacgaagtacaatcgctgaatttgcctaaaccgcaagtgagtgcttcgatttcaccgctg
tttagcttaatacgtaatgcgattggtgatttgaaccatatgaacgctcacatgggctat
caacttgatcgtcaaactcgcaagctacaagaaagctaccgtcgcgacagtcgcacgggg
ctgcaaaatcgcgtggcgctgcaagagcgcttaagttacatcgatagtgacgagcatttg
ttaacgcttaagctactcaatttcagccatatcaacgaaaagtacgggtatcgagtcgga
gatcagctgctcaaagatctgtcgatgcattttaccaatcgattgagaaagcgcttaggc
atgccagcggcgctgcaactgtacagcattggtgtaggtgagtgggcttttgtgtttaag
gctgaacaaagcagcgagacgataaaacagcactttactcgttttgctgatgcggttgag
caaactaactttgagccgctcggcctgcgcgaaattgattacctgtctatttccttgtgt
ggtggcttggttagccgtcgtgattttccatcggcttctcctgatgagctcttattaaaa
ggcatagaagcgcgtcgttctggcgttcgcagcaacacacatatttgcaacgctaaagac
atcgaagtcagtgaagatgtacgtaaagagcaactagggtggttgagttgcgtcagccgc
gcgattctcaagcagaacatcattacgtatagccaaccgattgtgcacgcttacagtcat
cttcctgccagccaagaatgtctggtgcggattttagaagaagatggaacagtgattgcg
ccggggcgatttttaccgatcatctcagacacgcatttgtacaccagattgagtcgtcac
atgatccgctcgacgctgcattacatgcgagataagaaaggggatttctcgattaacctg
tctccgcaagatttgttgagcgacaaaacgttgatgttgctggagcatgaaatcagccag
ttgaatgacccgacgcggatagggctggaagtactggagtctgaacagattaaagattac
ggtcgtatgatagaagtgtgcagccatttcagaaaactgggggcgcgcattatcgtggac
gattttggttctggatactccaatattgatgagatcttaaagttagagccggaagtgata
aagctggatggcagcttgattagagacatcgataaggatttaaagcagcgcaaaatagct
tctcagttggtgcgtttgtgtcaggtgtttaatgcagaaacggtcgcagagtttgtgcac
aatcgagaggtgtgcaaaatcgcgcaggatatgggcgtcgattatctgcaaggctactac
ttaggtgaacctacgcgtctgttttag
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