Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_01600
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Entry
M634_01600 CDS
T02761
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03420
Nucleotide excision repair
vpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M634_01600 (uvrD)
03430 Mismatch repair
M634_01600 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_01600 (uvrD)
Enzymes [BR:
vpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M634_01600 (uvrD)
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M634_01600 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
M634_01600 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGQ89677
LinkDB
All DBs
Position
I:complement(317934..320108)
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AA seq
724 aa
AA seq
DB search
MMDPSLLLDGLNDKQCEAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDGDDQ
QRLLKRLIKAQNLDEKQWPARQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTREFPSVTTIRLEQNYRSTKTILEASNTLIAN
NTERMGKELWTDGVVGEPISVYSAYNELDEARFAVNKIKEWQDKGGALNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALAYMRLMANRNDDAAFERVVNTPTRGLG
DKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRFIELITALEDDTLEMPLHE
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccatctctattactcgacggtttgaacgataaacaatgtgaagccgttgct
gcacctctagaaaacttgctcgtccttgctggtgcagggagtggtaagactcgtgttctt
gttcaccgtatcgcttggttgatgtcggtagaacaagcgtctccattctcaatcatgtcg
gtaacctttaccaacaaagcggcagcggagatgcgtggccgtattgaagagttgatgatg
ggcagtgcgtcaggcatgtggaatggtacctttcacggtatttgtcaccgcattttgcgc
gcgcactatcttgatgccaagctaccggaagactttcaaatcatcgacggcgacgatcaa
cagcgtttactgaagcgtctgatcaaagcacaaaatctggatgaaaagcagtggcctgca
cgccaagtggcttggtggattaacggcaaaaaagacgaaggtctgcgcccagcacatatc
gatgcataccacgatcctgtgaccaaaacctacttgcagctatacaccgcttatcaagaa
gcgtgtgaccgtgcaggtttggtcgactttgcagaaattctgcttcgcgctcatgagcta
ctgcgcgataacaagtttgtccgagagcactaccaggcacgctttaaacacattctggtt
gacgagttccaagacaccaacaatatccaatacgcttggctacgcatgatggcggggcct
gagtgtcatgtgatgattgtgggtgacgatgaccaatcgatttacggttggcgcggagca
aaagtcgaaaacattgagaaattcacccgtgaattcccaagcgtaaccaccattcgccta
gagcagaattaccgttccaccaagaccattttggaagcttccaataccttgatcgccaat
aacaccgagcgtatgggtaaagagctgtggactgacggcgtcgttggtgaaccgatttcg
gtttacagtgcttacaacgagttggacgaagcccgttttgcggttaacaaaatcaaagag
tggcaagacaaaggtggagcattgaatgatgcagcgatgctgtaccgcaacaacgcccag
tctcgtgtactggaagaagcgttgattcaagctggtctgccataccgtatttatggcggt
atgcgattcttcgagcgtcaggaaatcaaagacgcactggcctacatgcgtttgatggcc
aaccgtaatgacgatgctgcatttgaacgtgtggtgaatacgccaactcgtggtttaggt
gacaagacactagaaaccattcgccgtgcggcgcgtgatcgtggttgcacgatgtgggaa
gccagcgttgcgatgttggatgaacaagtgctcgcgggtcgagcggctggggcattaggt
cgctttatcgaacttattaccgcactcgaagacgacacgttagagatgccgttgcacgag
caaacagaccatgtgatcaagtactctggcttgtttgccatgtatgagcaagagaagggc
gaaaagtctaaggctcgtattgagaacttggaggaattggtgaccgcaactcgccaattc
gagaagccagaagaagcggaagagatgtcgctgctgactgcgttcttgactcatgcggcg
ctagaagcgggtgaagggcaagccgacgaatttgaagatgcagttcaattgatgacattg
cacagtgcaaaaggtttggaattcccattggtgtttatggtgggcgttgaagaaggcatg
ttcccaagccagatgtcggcggaagaggctgggcgtttagaggaagagcgccgcctgtgc
tacgtcggtatgacgcgcgcgatgcaaaaactctacatcacttatgcggaaatgcgccgt
ttgtatggtcaagataagtaccataagccatcgcgttttattcgtgagttgccggaaacg
tgcctagacgaagtgcggatgaaagcgcaagtcagccgacctgcaagcagtggtcgcttt
agccaaactgcagtgaaagagaacttcaacgagacgggcttttcacttggttcacgcgta
atgcatccaaagtttggcgaaggcaccatcattaactttgaaggcagcggtccacagagt
cgcgttcaaattgcgttcaatggtgaaggcattaaatggttagtgactgcttacgctaga
ctagagaaactgtaa
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