Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_02535
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Entry
M634_02535 CDS
T02761
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03030
DNA replication
vpf03410
Base excision repair
vpf03420
Nucleotide excision repair
vpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M634_02535
03410 Base excision repair
M634_02535
03420 Nucleotide excision repair
M634_02535
03440 Homologous recombination
M634_02535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpf03032
]
M634_02535
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_02535
Enzymes [BR:
vpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M634_02535
DNA replication proteins [BR:
vpf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M634_02535
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
M634_02535
NER (nucleotide excision repair)
GGR (global genome repair) factors
M634_02535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AGQ89823
LinkDB
All DBs
Position
I:503461..506259
Genome browser
AA seq
932 aa
AA seq
DB search
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAV
VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT
LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK
DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNELLEGGSGTVE
AVELAGSAQASSSSSSSHAEMETSAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTE
TDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKV
GQNLKYDASVLARYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIA
GKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVTVL
SRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLP
VVKKTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHT
SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKILAVDYSQIELRIMAHL
SGDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQL
GIPRGEAQAYMDKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRK
AAERAAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEI
ESKVQKLMESAAELKVPLVAEAGHGDNWDQAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtattcctgaaaatccgctgattcttatcgacggttcttcttacctatatcgc
gcttttcacgcttacccgggcacgatgagtaatggtgaaatcccaaccaacgcagtttac
ggtgtggtgaacatgctacgcagtatgatgcgtcaatttgcgtctgagcgtattgcggtg
gtgtttgatgcgaagggtaaaaccttccgtgatgagatgtattcagaatacaaagcgaat
cgtccaccaatgccggacgatctgcgttgccaaattgaaccattgcacaacgttattcgt
gcgatgggtttgccgttgatctgcgttcctggcgtggaagcagatgacgtcatcggtacg
ttggcttaccaagcctcgcaacaaggcatgccagttttaatcagtactggcgataaagat
atggctcagctggtggatgacaacattaccttgatcaacaccatgacgaacgtagtgatg
gatcgtgaaggggtggtggaaaaatttggtattccgccagagttgatcatcgactatcta
gcgttgatgggcgataaagtcgataacatccctggtgttccgggtgtgggcgacaaaacg
gcgactgctttgctgcagggcattggtggccttactaagttgtacgaaaatctggatgat
atcgcggcacttggtttccgcggttcgaaaaccatggcgaagaagttggtcgacaacaaa
gacaacgctatgctgtcttatgagctggctaccatcaagctggatgtggaactggaagaa
acaccagagtcgctactgaaagcagagccaaacaaagacgaattgatcaaactgtatggt
cagttgacgtttaagtcttggttgaacgaactgcttgaaggcggctcaggcactgtcgaa
gcggttgaacttgcgggctctgcgcaagcatcatcatcttcttcttcttcgcatgctgaa
atggaaacctcagcggtaacgattgatcgcagtcagtacgaaaccattttggacgaagct
tctttcaatgcgtggctagaaaaactcaaagcggcagaactgtttgcctttgataccgaa
accgacagccttgattacatggtggcgaacctcgtcggtttgtcatttgctatcgatgaa
ggtattgcggcttatgtccctgtcgcacacgattatttggatgcgccagagcaactggat
cgcgattgggttctggagcagctgaaaccaattcttgaagacgacgctcaagcgaaagtc
ggtcagaacctaaaatacgacgcgtctgtgctggcacgttacggcatcgagatgaaaggc
atcaaatacgacaccatgttggcgtcttacgtttacaacagcgtaggcggcaaacacgac
atggacagcttggcacttcgtttcctgcaacacagctgcatttcattcgagcaaatcgcg
ggtaaaggtaaaaaccaactgaccttcaaccaaatcgagcttgagcaagcatcgccatac
gcagctgaagatgcagacgtcacgcttcgtctgcacaatcgtctgtttgctaacatcgaa
caagatgaaaagctaaaatcggtttacgaagaaatcgaaatgccgctagtcactgttttg
tctcgcattgagcgcactggtgttctgattgatgacatgaagctgagcgctcaatcggta
gaaatcgcggcccgtttagaagagcttgaacaaaaagcttacgaaatcgcagaacaagag
ttcaacatgaactcgccaaagcagttgcaagccatcctatttgaaaaaatgggtctacct
gttgtgaaaaaaacgccatctggcacaccttcaaccaatgaagaggtgttgcaggagctt
gcgttggattacccactgccaaaactgatcctagaataccgtggcttagcgaagctgaag
tcgacatacacagacaagctgccgaagatgatcaacccttcaactggtcgtgtacacacc
tcttaccatcaagcggtgactgcgacaggtcgtttgtcatctaccgatccaaacttgcag
aacattccaatccgtaacgaagaaggtcgtcgtattcgtcaggcgtttgtagctcctgct
ggttacaagattctggctgtcgactactcgcaaatcgagctgcgtattatggcgcacctt
tctggcgaccaagcgctgcttgatgccttccgcgacggtaaagacattcacgccgcaacc
gcagcagaaatcatgggagtgtctattgatcaggtatccagtgagcagcgtcgtcgtgca
aaagcggtgaactttggtctgatctacggcatgagcgcattcggcttggcaaaacagctg
ggcattcctcgtggtgaagcgcaagcttacatggacaaatacttcgagcgttacccaggt
gtaatgcagtacatggaagacacgcgcagcgcagcagctgataaaggttatgtagaaacc
atttttggtcgacgtttgcatctgccagaaatcaaatcgcgtaatggtatgcgtcgtaaa
gcagcagaacgagcggcgatcaatgcgccaatgcaaggcactgcagcggacattattaag
aaagcgatgctgctagtggatcaatggattcaagaagaaggcaatggtcgcgtaaaactt
ttgatgcaagtacacgatgaactggtatttgaagtcgaagagtcgtctttgtccgaaatt
gaaagtaaagtacaaaaattgatggaatctgcagcagagttgaaagtgcctttagtggca
gaagctggtcacggtgacaactgggatcaagcacactaa
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