Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_04455
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Entry
M634_04455 CDS
T02761
Name
(GenBank) Fis family transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
M634_04455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpf03000
]
M634_04455
Transcription factors [BR:
vpf03000
]
Prokaryotic type
Helix-turn-helix
Other families
M634_04455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
AAA_16
AAA_5
HTH_29
HTH_50
HTH_7
HTH_22
HTH_17
AAA
HTH_Tnp_1_2
TIP49
HTH_IclR
HTH_30
TrmB
DUF134
HTH_23
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
AGQ90135
LinkDB
All DBs
Position
I:906335..907669
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AA seq
444 aa
AA seq
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MAGQFKMDSIPGSLVVVGGTYEPWLSVLEQVGWKCHQVGDLRKANTLLEDIGPCIGIVDL
SHDEFSLNGLANLVSSHKHVRWLAFIRESQLGTDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPSFGNSLDMGLIGESIPMKRLRDQVKRIGPTDVSILISGESGTGK
EAVARAIHKVSSRSHKPFMSINCRALNEQRFQAEVFGIAADAEMGPSLLEQADGGTVLFN
DILTISKDQQMNLLRFLQEGTIETREGVKNVNVRILAANSSDVEKALIDGDFNEELYHYI
NVLRINVPSLKERASDIALLARFYLQEFSKEYNSQAKSFSEDALKALTRYFWPGNVRELM
NQVKRAVLMSDSVMIEEHHLDLPQRNDSKRSLKSIREKSERDALLVVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISDQAM
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcagtttaagatggattccatcccgggatcgcttgtggtagttggcggtact
tatgagccttggttatcagtactggaacaagttggctggaagtgtcaccaagtaggcgac
ttacgcaaagctaacacgttattggaagatattgggccttgtatcggtatcgttgacctg
agccatgacgagtttagcttgaatggtctggcaaacttagtgagttctcataagcacgtg
cgttggttggcgtttattcgtgagtctcagctcggcacagacaccatctgccaattcatc
gttaacttctgtatcgacttttttactgccccaatcccagatgcccaactgttgagcacc
atcggccaccaacttggtatgctcaagctagagaaaaaagtttggccaagctttggcaat
agcctcgatatggggctgattggcgaatctatcccgatgaagcgcttacgcgatcaagtt
aagcgaattggtcctacggacgtgagtattctgatctctggcgagagcggtactggtaaa
gaagcggttgctcgtgcaattcacaaagtatcttcccgttctcataagccctttatgtcg
attaactgccgcgctttgaatgagcaacgtttccaagcggaagtctttggtattgctgcg
gatgctgagatgggcccaagtctgttggaacaagcagatggtggtactgtgttgtttaat
gacattctgaccatttcgaaggaccagcaaatgaacctgttaaggtttttgcaagagggc
acgattgaaacgcgcgaaggtgtgaagaatgtgaatgtgcgtattcttgctgctaactcg
tcagacgtagaaaaagctttgattgatggcgacttcaacgaagagttgtaccattacatc
aatgtacttcgtatcaacgtaccaagcttgaaagagcgcgcgagtgacattgcactacta
gctcgcttctatctgcaagagttctctaaagagtacaactctcaagcaaaaagtttctca
gaggacgctttgaaagctctgactcgttacttctggcctggtaatgttcgcgagttgatg
aaccaagttaagcgtgcggtgttgatgtctgacagcgtgatgattgaagagcatcatctc
gatttgccgcaacgtaatgattcaaaacgcagtttgaaatcaattcgtgaaaagagtgag
cgtgatgcgttattggttgtgttggagtcgcactctggtcaagtttccaatgcggcgaaa
gaacttggtgtgtcgcgtgcaaccatgtatcgactacttaacaagcacaacttgatttcc
gatcaagcgatgtaa
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