Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_07110
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Entry
M634_07110 CDS
T02761
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpf03032
]
M634_07110
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_07110
Enzymes [BR:
vpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M634_07110
DNA replication proteins [BR:
vpf03032
]
Prokaryotic type
DNA Topoisomerases
M634_07110
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M634_07110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
CFAP410_C
Motif
Other DBs
NCBI-ProteinID:
AGQ90546
LinkDB
All DBs
Position
I:1467198..1469828
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSAE
EKARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVSELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKSD
FKLLVAQKDGVAFKPVNETETKAAISVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIDSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSDVSVKAEDLQGVDADAHKLYSLIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPP
ARFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGEVNWKAVLDNFFADFTGDLEKAELDESEGGMKLNHIVM
TDIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYVVEYGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVSELARFEERLPEKFKYLTTAPQEDPDGRPAVVRFSRKT
KENYVRSEDDGKPSGWTALYVDGKWEVTDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtctccagccaaggcaaagacgataaataagtac
cttggtaaggactttattgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaagaaagctgcagctatctcaacaaaagggatgagcgcagaa
gagaaagcgcgcgttaaaaaagaaaaagatcgcaaagcgctgatcaaaaaaatggggatt
aacccatatcatgactgggaagcgaactatcagattcttccgggtaaagaaaaagtcgta
agcgaactacaaaaattagccaaagatgctgattgcgtttatctcgcaaccgatttggac
cgcgagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgagtagtctttaacgaaattactaaaaatgctatccaacaagctttccagact
cctggcgagttaaatatggatggcgttaatgcgcagcaagcacgtcgattcatggaccgc
gttgtaggtttcatggtttctccattgctatggaagaaagtggcacgtggcctgtctgct
ggtcgtgttcaatctgtagcggtgaagctattggtagaacgtgagcgtgaaatcaacgca
tttgtgccagaagaattctgggatattcacgcaaataccaaaactaaagataagtcagat
ttcaaactgctggttgcgcagaaagatggcgttgcgtttaaacctgttaacgaaacagaa
actaaggcagccatttctgttcttgaaaacgcaagctacgaagtgtgtaagcgcgaagac
cgcccgacgaagagcaagccttctgcgccatacatcacatcaacattgcagcaagcggca
agtacccgtttaggttacggcgttaagaaaaccatgatgttagctcagcgtctgtatgaa
gcgggttacatcacttatatgcgtaccgactcgactaacttgagtgcggaagcagttgat
gctgttcgtgacttcattgattcagagtttggtgacaagtatcttccagctaagccacta
acgtacggcagcaaagaaggtgctcaagaagcgcacgaagcgattcgtccatctgatgtg
tcagtgaaagcagaagacttgcaaggtgtagatgcggatgctcacaagctttactcactg
atctggaatcagttcgttgcgtgtcaaatgacacctgcagaatatgattcaaccacaatc
agcgtaaaagcggcggaatacacgctaaaagcgaaaggtcgtatccttaaatttgatggt
tggactcgcgtacagcgtccaatgggcaaaaacgaggacacaatccttcctgcggtacaa
cttggcgataagctaagcctagagtcacttgaccctaaacagcactttacaaagccacct
gcgcgctttacggaagcggcattggttaaagagttagaaaaacgaggcattggccgtcct
tcgacttacgcatcgatcatttctactatccaagaccgtggctacgtaaaagtagagcag
cgccgattctacgctgaaaaaatgggtgaaattgttactgaccgtcttgatgacagtttc
aacgatttaatgaactacgactttactgcgcgtatggaacagaaactggaccaaatcgca
gaaggtgaagtgaactggaaagcagtactagacaacttctttgcggatttcactggtgac
ctagaaaaagccgagttagatgaatctgaaggtggtatgaagctaaaccacattgtgatg
acggatatcgagtgtccgacatgtggtcgccctatgggtattcgtaccgcttctacaggc
gtattcttaggctgttctggttacgcattgccacctaaagaacgttgtaagacaaccatt
aacttgggtgacgaagaaggtattatcaacgttttagaagaagacgttgaaacggctgct
cttcgtgcgaaaaaacgttgtccgatctgtgaaactgcgatggacgcgtacttgattgat
gacaagcgcaagatgcacgtttgtggtaacaacccgaactgtgaaggctatgttgttgag
tacggcgaattcaaagtgaaaggctacgatggccctgttgttgagtgtgacaagtgtggc
tcagacatggtgcttaagaacggccgctttggtaaatacatggattgtacgagtgaaact
tgtaagaacacccgtaaaatcctgaagaacggtgaagtagctccacctaaagaagatcct
gtgcacttcccagaattgccatgtgaaaactcagatgcgtactttgtgcttcgtgatggt
gcttctggcctatttatggcggcaagcaacttccctaaatcgcgtgaaacaagagcacct
ctagtctctgaactggcgcgttttgaagagcgtctaccagagaagtttaagtacctaaca
acggctcctcaagaggatccagatggccgcccagccgtggttcgctttagccgtaagacg
aaagagaactatgttcgttcagaagacgacggtaaaccaagtggttggactgcactttac
gttgatggtaagtgggaagtcactgataaacgtaaaaaagcgaaagcttaa
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