Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_08705
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Entry
M634_08705 CDS
T02761
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M634_08705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpf03019
]
M634_08705
03016 Transfer RNA biogenesis [BR:
vpf03016
]
M634_08705
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M634_08705
Messenger RNA biogenesis [BR:
vpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M634_08705
Transfer RNA biogenesis [BR:
vpf03016
]
Prokaryotic type
tRNA degradation factors
M634_08705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
WHD_RNase_R
Peptidase_S24
DUF6577
CSD
Motif
Other DBs
NCBI-ProteinID:
AGQ90815
LinkDB
All DBs
Position
I:complement(1821317..1823542)
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AA seq
741 aa
AA seq
DB search
MKLNISAQSLNHTKYDNVIPSRDSILSLFDKVKNYLSYEQISHSSGLNDEPEKNALKKRL
RAMERDGQLIFTRRKGYKRVDQSSLVTGKISIHADGFGFLTYDDNEKDLFLPKHQLSHVF
DGDIILVLKGHTQHQGRSNHRFIKIVERKTTHIVGLLKRKGSKLYLLPENSKLTQTIYVT
PNELIAKNVGKLVHCKINTYPDHRQPTTVEVAEVLGRPGEAGIEVKLALRRHGINDKWDK
DVLDAASAFGSQVEEKDKTSRVDYRDLPFVTIDGDDAKDFDDAVYGYQMDNGQWKLFVAI
ADVSHYVKPNDHLDLEAQSRATSVYFPGCVVPMLPESLSNGLCSLNPNEDRLVMVCEMTF
DDEGNMLDSEFSEGIIHSHARLTYDDANRIIMQSSAKTTYQSNNPKNNIAQYLVNLHRLY
LNLSGQRRVRGAIDFDTQELAFKLNNKKKIASIVPVVRNDAHRMIEEFMLCANVATAQFL
ELNKIPSLYRVHSGPQMKKLTSLRMLLAEKGLTLAGGDKPTSHDYNALLDQVRDLDECDI
IRTLLLRSQSQAEYSPKNLGHFGLAYDAYAHFTSPIRRYPDLLIHRAIRAKLREKTTGKL
RSLLMKLKPIRQLAGISNSYPYDTKEIEQLSVHCSHQSRQADEVSREVESALKCHYMKPF
IGRNFMGSVSGVTHFGVFVELEENRIEGLIPLSSFQNGDFEFDAIKQKISSQTATFALGT
QVNITVKEIDSKQRKIIFNFA
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaaatatatccgctcaatcactaaaccacactaaatatgacaatgttattcct
agccgagattctattcttagcctattcgataaagtaaaaaactacttaagctatgaacag
atttctcattcatctggtttgaatgacgagcctgagaaaaatgccttaaaaaaacgctta
agagccatggaacgtgatggtcagcttattttcacgagaagaaaaggctacaagagagtt
gaccaatcatcgctagtgactggcaagataagcatccatgcagacggttttggttttctc
acctacgacgataatgagaaagatctattcttaccaaagcatcaacttagtcatgtgttt
gatggtgatattatactggtgttgaaagggcatacgcagcatcaaggtcgttcaaaccat
cggtttatcaagatagtggagcgaaaaacaactcacatagtgggtttgttaaaaagaaaa
ggttctaaactttacttattgccagaaaactcgaagttaactcaaaccatttacgtcact
ccaaatgaactgattgctaaaaatgtcggcaaacttgtccactgtaaaatcaatacttac
ccagaccatagacaaccaactaccgttgaggtagcggaagtgctagggcgtccgggagaa
gctggtatagaagtgaaattggctttgcgtcgtcatggaatcaatgacaaatgggataaa
gacgtacttgatgctgcttctgccttcggctctcaggtggaagaaaaggacaagacatca
cgagtggactatcgagatttaccttttgtcactattgatggtgatgacgcaaaagacttt
gatgatgctgtttatgggtatcaaatggacaacggtcagtggaagctattcgtcgcaatt
gctgacgtatctcactacgtcaaaccaaatgatcatttagatcttgaagcgcagagtcgc
gctacatccgtctatttccctggatgcgttgtgccaatgctgccagagtctctatctaat
ggtttgtgttcactaaaccccaatgaagacagattagtaatggtatgcgagatgaccttt
gatgatgagggtaacatgctagattcagagttttctgaaggcatcattcactctcatgcc
agattaacgtacgacgacgctaaccgcattatcatgcaatcttcggctaaaacaacatac
caaagcaacaaccctaaaaataatattgcgcagtatttggtgaatcttcatcgtttatat
ttgaacttatctggccaacgcagagttcgtggagcgattgactttgatacacaagaactc
gcttttaagctaaacaacaaaaagaagattgcctctatcgtccctgttgttcgaaatgac
gctcaccgaatgatcgaagagtttatgctgtgcgctaacgttgctactgcgcaatttcta
gagctaaataaaataccgagcctatatcgtgtccactctggccctcagatgaaaaagcta
acctcactgagaatgttacttgcggaaaaagggctaactttggcggggggtgacaagcca
acgtctcacgactacaacgcacttttagatcaagttcgagatttggatgagtgtgacata
atacgtaccttgctgctgcgctctcaaagccaagctgaatattcgcctaaaaacttgggc
cactttggcttagcatacgatgcttacgcacactttacatctccaattcgtcgttaccct
gatttactcattcatcgtgccatccgtgccaaacttcgagagaaaactactggtaaatta
cgtagcctgttaatgaagctcaagccgatacgccagctagcagggatttcgaatagttac
ccttacgatacaaaagagattgagcaacttagtgtgcactgttcacatcaatctcgccaa
gctgatgaagtaagtcgtgaggttgaatcagcactgaaatgccactacatgaaaccattt
attggacgaaacttcatgggaagcgtttctggagttacgcactttggtgtttttgtagag
ctggaggaaaacagaatcgaaggtctcatacctttatccagttttcaaaatggcgatttt
gaatttgatgcgatcaaacaaaaaatctcaagccaaacggcaacttttgcacttggcact
caagtaaacattactgttaaagaaatcgactctaagcaaagaaaaatcatattcaacttt
gcttaa
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