Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_12510
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Entry
M634_12510 CDS
T02761
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M634_12510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpf03019
]
M634_12510
03009 Ribosome biogenesis [BR:
vpf03009
]
M634_12510
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M634_12510
Messenger RNA biogenesis [BR:
vpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M634_12510
Ribosome biogenesis [BR:
vpf03009
]
Prokaryotic type
rRNA processing factors
M634_12510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGQ91266
LinkDB
All DBs
Position
I:2592037..2595108
Genome browser
AA seq
1023 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KEHIQLVRPDFINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEPVLKGFAAPAQTA
PAPVSKPAPVAKKKEVEQEAKPGLFSRLFKALGSFLFGGSEEVKEEPKQEEKKSNRDNKR
NKRDRNDRRRSNQRDNREGRENRDNRRRRKPREEQANEQNEAQQPANKQQPNRSQKRKPK
PQQAEKAQEPKANAKVAEKGLQLAAEARSEVKPEENKAKANAKTEKVKERRQRRKLNKSV
RVKDQLADEQVEETVVKAIEPVESQVDQAVDTAADAQQDNKQGESKQRRNRRSPRHLRAS
GQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPAPKKEERVQEEAVVAIATVP
AMQGGFACPEMAMGKVIIRREQPAVAEAPVVEPKVQETVEAKAESPIVEAVAPEKAEPVA
VDQAPVEPIVEVAEAPIAEVTTDTVVEEAPVQEPVVAETVEEAATEVAVETPVAAPEMKA
EVINVVAKPRASAPMTKAPGPQELREIEVAAAPFKAERYQAKGAGSQVATNRASAAMTKP
NFN
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgat
ggccagcgacttttcgatcttgatatcgagagtccaggacatgaatctaaaaaagcgaat
atctacaaaggacgtatcacacgtatcgaaccaagcttagaagccgcatttgttgattac
ggtgctgagcgtcacggtttcctccctctaaaagaaattgcccgcgaatacttccctgaa
ggttatacctaccaaggccgtccaagcattaaagaagtgctgactgagggccaagaagta
atcgtacaagtagaaaaagaagaacgtggtagcaagggcgcagctctaaccacgtttatt
tctcttgcgggtagctaccttgttcttatgccaaacaaccctcgtgcaggcggtatctct
cgccgtatcgaaggtgatgagcgtactcaactaaaagcagcattaagcactctagaactg
cctcaaggcatgggtctgattgttcgtactgctggcgttggtaagagcgcagaagaactt
gagtgggacttgaacgtactgctgaaccattggagcgcgattaagggcgcggcagactct
aaccctgccccattcttaatccaccaagaaagtaacgttatcgttcgtgcaattcgtgac
tatttgcgtcgtgatattggtgaaattcttatcgacagcaacaccatttatgaacgtgcg
aaagagcacattcaattggttcgcccagatttcatcaaccgcgttaagaagtacgaaggc
gaagtgccgctgtttagccactaccaaatcgagagccaaattgaatcggctttccaacgt
gaagtgcgcctaccatctggtggttctatcgtaatcgacccaacggaagctctgacttct
atcgatatcaactctgctcgtgcaactaagggtggtgatatcgaggaaacagcactgaat
accaacctagaagcagctgacgagatcgctcgtcaattgcgtctacgcgacctaggtggt
ctagtggttatcgactttatcgatatgacaccagtacgccaccaacgtgaagtagaaaac
cgcctacgtgaagcagttcgactagaccgtgctcgcgtacaaatcggtcgtatctcacgc
tttggtcttctagagatgtctcgtcaacgattgagcccttctcttgcagaagcaagccac
cacatttgtcctcgctgtagcggtacaggtgttgttcgtgacaacgaatctctagcactt
tctgttcttcgtttgattgaagaagaagcactaaaagacaacacagctcaagtattggct
gtagtaccagtgccaatcgcatcttacctattgaacgaaaaacgtcgctcggttaaccat
atcgaacgaattcaagaagtgaaaattacggttgttcctaactcagacatggaaacaccg
cactttgaagtaattcgcgtacgcgaaggtgaagagtttgatttaatttcttacctactt
cctaagaagttggaagcaatgaaagaagcagaaggtaaagaaccttctgaaacagacatc
aaacctaagcgaatcgaagagccagttcttaagggctttgcagcgccagctcaaaccgct
ccagctcctgtttctaaacctgcgccggtagcgaagaagaaagaagtagagcaagaagca
aaacctggcctattcagccgtttgtttaaagcactaggtagcttcctatttggtggttct
gaagaagtaaaagaagaaccaaaacaagaagagaagaaatcaaaccgcgacaacaagcgc
aacaaacgcgatcgcaacgaccgtcgtcgtagcaaccaacgcgataaccgcgaaggtcgt
gaaaaccgtgataaccgtcgtcgccgtaagcctcgtgaagagcaagctaatgagcaaaac
gaagctcaacagcctgcaaacaaacagcaaccaaaccgtagccagaagcgtaagccaaaa
cctcaacaagctgaaaaagctcaagagccgaaagcaaacgcgaaagtagcggaaaaaggc
ttgcaacttgcggctgaagctcgctcagaagtgaagcctgaagagaataaagcgaaagca
aacgcgaaaacagagaaagtcaaagagcgccgtcaacgtcgcaaactgaacaaatctgtt
cgtgttaaagatcaacttgccgatgagcaagtagaagaaacagtagtgaaagcaattgaa
cctgttgagtctcaagtagatcaagccgttgatacagcagcagacgcacagcaagacaac
aagcaaggtgaatcgaaacaacgtcgtaaccgtcgttctcctcgtcacctacgagcaagt
ggtcaacgtcgtcgtcgtggtcgtgatcgtcgtcctaacccattccgtctgcgcaaaggc
ggtgtagcatctcctgagatggcaatgggtaaagtgatgccacgttacattccaaaacca
gcgcctaagaaggaagagcgagttcaggaagaagcggttgtagcaattgcaactgtacct
gctatgcaaggtggttttgcttgccctgaaatggcaatgggtaaagtcatcatccgtcgt
gagcaaccagcggtagctgaagcacctgttgttgaacctaaagttcaagaaacagtagaa
gctaaagctgaatcaccgattgttgaagctgtagcgcctgaaaaggcagaaccagtagcg
gttgatcaagctcctgttgagccaatcgttgaagtggctgaagcacctattgcggaagta
acaacagacacagttgttgaagaagctccggttcaagagccagtcgttgcagaaactgtg
gaagaagcagcaacagaagttgccgttgaaactccagtagcagcgccagagatgaaagct
gaagttatcaacgttgttgctaagccacgagctagcgcaccaatgacaaaagcacctggt
cctcaagaactacgtgaaatcgaagtagccgcagcgccgtttaaagctgaacgctaccaa
gctaaaggtgctggtagccaagtggcaacaaaccgcgcctctgcagcaatgacaaagcca
aacttcaactaa
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