KEGG   Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_13560
Entry
M634_13560        CDS       T02761                                 
Name
(GenBank) RNA polymerase sigma 70
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vpf  Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf02020  Two-component system
vpf02040  Flagellar assembly
vpf05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vpf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    M634_13560
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    M634_13560
  09142 Cell motility
   02040 Flagellar assembly
    M634_13560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpf03021]
    M634_13560
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vpf02035]
    M634_13560
Transcription machinery [BR:vpf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     M634_13560
Bacterial motility proteins [BR:vpf02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    M634_13560
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 HTH_23 HTH_10 UPF0122 GerE MarR_2 Rv2175c_wHTH Phage_terminase UPF0175 MarR KORA PhyR_sigma-like
Other DBs
NCBI-ProteinID: AGQ91425
LinkDB
Position
I:complement(2808300..2809034)
AA seq 244 aa
MNKAITYDQHGKFNSQQAFIERYSVLVKRIAHHLLGRLPPSVQVEDLIQAGMIGLIEAQQ
NYDGSKGASFETYAGIRIRGAMLDDMRKGDWVPRSVHKNNREINQAVAELEGVLNRDPTD
SEVAAHLGMSLDQYHSALTDINCSRLVGIEDLGVSDDVISPADETDDSNPFKGVADESFR
KALVESIKQLPEREALVLSLYYDEELNLKEIGDVLGVSESRVSQILSQAMQRLRTKLSAW
TQND
NT seq 735 nt   +upstreamnt  +downstreamnt
gtgaataaagcgataacctatgaccagcatggcaagtttaatagtcagcaagcgttcatt
gaacgctactctgtgttggttaaacgtattgctcaccacctgttaggccgtttaccgccg
agtgttcaggtagaggatttaattcaggccggcatgatcggtcttatcgaagctcagcag
aattatgatggttctaaaggtgcgagctttgaaacttatgctggtatccgcattcgtggc
gccatgttagatgacatgcgcaaaggtgactgggtaccgcgttctgttcataagaataat
cgcgaaattaatcaagcggtcgcagaactggaaggcgtgttaaatcgtgatccgacagat
tctgaagtagcagcacatctcgggatgtcactggatcaatatcatagtgctctgaccgat
ataaactgctcaagattagttggtattgaagatttaggcgtttctgatgatgtgatttcg
ccagcagatgaaactgatgacagcaacccatttaagggtgtagcagatgaatcgttcaga
aaagcactggttgaatcaataaaacagcttccagagcgtgaagctttagtactttcgctt
tattatgacgaagaactcaatttgaaagaaattggtgatgtattaggtgtaagcgaatct
cgtgtaagccaaatactaagccaagcgatgcaacgtttacgcaccaagctcagtgcgtgg
acacaaaatgactaa

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