Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_14255
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Entry
M634_14255 CDS
T02761
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
M634_14255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_14255
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
M634_14255
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M634_14255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
Helicase_RecD
AAA_11
SLFN-g3_helicase
UvrD-helicase
Viral_helicase1
AAA_22
AAA_16
nSTAND3
UvrD_C
DEAD
CbiA
AAA_28
MukB
TrwB_AAD_bind
ResIII
Herpes_Helicase
YrbL-PhoP_reg
T2SSE
AAA_7
NTPase_1
DUF87
SRP54
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
AGQ91555
LinkDB
All DBs
Position
I:complement(2946190..2948337)
Genome browser
AA seq
715 aa
AA seq
DB search
MTTNHNLHSDQDSLLVVLERLAHKGAIRQLDYQFACFIDSQTHDEQSDSQALAFIAGVVS
SELGKGHICLSLFDAQGQSTDLASKLGLFGESALALNTQLQGIDWIQVLQNSSLVGAQGE
ALPLMFDGERLYLHRYWHYEVTLAEKLNQLGAAVNLQPQEFARLSELLNHLFARQYHFLF
NALGKAVEAGSSNQVFRQQLVCDHLDVVASESLDWHAIDSVLSNARKVQDLQTLDELVPL
SACVNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQATHEKNLTIKLVAPTG
KAAARLTESIGKAVQELPVSPELKAKIPTESSTLHRLLGAIPNSAEFRHNKQNPLHLDIL
VIDEASMVDLPMMYKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFHALGYGKEQA
SAIAKLTGFDTLAHTGNSASSIADSLCMLQKSYRFDARSGIGQLAKAVNSGSAASVDNVW
VRDFSDIEHFALSSQHYNQMMQTLVQEYGRYLKRIGQQETNPETGEPESLTHKAKAVLDT
FNQCRLLCAIREGDFGVAGLNQRIEKALAARKFIQVQDEIWYHGRPVMVTRNDHGLGLYN
GDIGICMRDDTEEEPRLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHKSQGSEFDYTLM
ILPPDFSPILTRELIYTGITRAKKRLALYAELNVLKRGIKVKTTRASGLVQRLTN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaaatcacaatcttcattctgaccaagatagcctattggtagtgttggaacgc
ttggcgcacaaaggtgctattcgtcagctcgactaccaattcgcctgttttattgattct
caaacgcatgatgaacagtcggacagtcaagcattggcgtttatcgctggtgttgtcagt
agtgagcttggcaaaggacatatctgtctgtctcttttcgatgcacaagggcaatctacg
gatttagccagtaagttagggctgtttggtgagtcggcattggcgcttaatactcagctt
caaggcatagactggattcaagtattacaaaattccagcttggtcggcgcgcaaggagaa
gccttgccgctgatgtttgatggcgagcgtttgtatttgcaccgctattggcattatgaa
gtgacactggcggaaaagctcaatcagttgggcgccgcagttaacttgcagccacaagag
tttgcgcgattatccgagttgctcaaccatttgtttgcacgccaataccattttctgttt
aacgcgttaggcaaagcagtagaagcgggaagcagcaaccaagtgtttcgtcaacaattg
gtgtgtgaccaccttgatgtggtcgcaagcgaatcgttggattggcacgccattgattcc
gtgcttagcaatgcgcgcaaggttcaagatttgcaaacactggatgaactcgtaccactc
tcagcttgtgtgaactggcaaaaagtcgcggcggcggttgcgttaactcgtcgatttgct
gtgatttctggtggcccaggtacgggtaaaacaacgacagtaaccaaattgcttgctgct
ttgattgaacaggcgacgcacgagaaaaatctgaccatcaagctggtggcaccaacggga
aaagcggcggcgcgattaaccgagtccattggtaaagcagtgcaagaactgccagtttct
ccggagctaaaagccaaaattccgactgaatcgagcactctgcatcgattgcttggcgcg
attcctaatagcgcagaatttcgtcacaacaagcaaaatccactgcatttggatattttg
gttatcgacgaagcgtcgatggtcgatttgccaatgatgtacaaagtggtcgatgcctta
ccgaaacacgcgcggctgattttgctaggtgataaagaccaacttgcctcagttgaagca
ggggcagtgttgggtgatatttgttcgttccatgcattgggttatggcaaagagcaggcg
tcagccatcgcaaaactgacgggtttcgatactttagcccatacggggaacagtgcctcc
agcattgccgatagcttatgtatgctgcaaaagagctaccgatttgacgctcgctcaggc
attggtcagttggcaaaagcggttaactcaggttctgctgcgagcgtagataacgtctgg
gtgcgtgacttttccgatatcgaacatttcgccctaagtagtcaacattacaaccaaatg
atgcagacgttggtgcaggaatacggtcgttacctcaaacgcattggacaacaggaaact
aatcctgaaaccggagagccagagtcgctaactcacaaagccaaagcggtgttagatact
ttcaaccaatgccgattactgtgcgcaattcgtgaaggtgactttggtgtggctgggcta
aaccaacgcatcgagaaagcgctcgcggcgcgcaagttcattcaagttcaggatgaaatt
tggtatcacggcagacccgtcatggttacgcgtaatgatcacggtttaggtttgtataac
ggtgatatcggtatttgcatgcgagatgacactgaagaagaaccgcgtttgaaagtcttt
ttcgagttacctgacggcagtgtgaaatcggtcttgccaagccgagtacctgaacatgaa
acggcttacgccatgaccatccataaatcgcaaggcagtgaatttgattacaccctgatg
attttgccaccagactttagcccgatattaacccgtgagttgatttacacaggcattacc
cgcgcgaaaaagcgcttagctctttacgctgaactcaatgttctgaagcgaggcattaag
gtgaaaacgactcgtgcgagtgggctagtacagcggcttacgaattag
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