Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_14260
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Entry
M634_14260 CDS
T02761
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
M634_14260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_14260
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
M634_14260
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M634_14260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
ResIII
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AGQ91556
LinkDB
All DBs
Position
I:complement(2948337..2952020)
Genome browser
AA seq
1227 aa
AA seq
DB search
MDQMSGAECPLHTLDRTEQPQPTPLEPMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLG
HGNAETRHRVPLTVDQILVVTFTEAATAELRDRIRARIHDARIAFARGQSSDPVIQPLLN
EFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKAQ
VVADYWRRNFYPLPFTLAGEIRQLWSSPSVLLSDISNYLTGAPLSLSVPAMKGSLADLHT
ENLKKIDELKAQWRESQDDFLTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYP
DKLEKFAQNVLLEKTPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKN
QKQWLSFDDLLTQLSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIYLNN
PECGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVQAVNQVFALP
DSPFIYDSDIPFLPVKYSPNAEKRIWTMGGQKQPALTYWLQEADEKPLPKGEYLTRMAEA
AASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMIKQALADQGIASVYL
SNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALDAASLDALNNDEIVWENA
VNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLEEGASSQGENGERVLTDLMHIGELLQ
QASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLV
FLPFVFSYREASEAKYYDAANDRTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYA
CFIGASPLRNGRSTKEPTGVHRCAIGYLIQNGQEGGINDLHQGLTKQQDELDCVVVADPP
QQLEEKYVAPQEEIYDLSAKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDID
SSEEQDEADLVEPERSIFTFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQ
LDEEWLPILQQLIDTVLATPLDGKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQR
HDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVTHYHGEALKSAM
ADHRYDLQYQIYALALHRFLHSRLANYQYEQHFGGVYYLFLRGMDGQSDHGIFAAKPTLE
FLQEMDRLIDGQVLETRSTQAGQMELL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaatgtcaggtgcagagtgtcctctacatacgttagaccgcacagagcaacct
caaccaacgccactagaaccgatgacgtttcctctgcatggtgcgaggttaatcgaggca
tcagcaggtacaggtaaaaccttcactattgcaggtttatatctgcgccttttgcttggt
cacggcaacgcggaaactcgacatcgcgtaccgcttacggtcgaccaaattctggtcgta
acctttaccgaagcggcaactgcggaattgcgcgatcgtatcagggcaaggatccatgac
gcgcgaatcgcgtttgcgcgtggacagagttccgatccggtgatccaacctttgcttaat
gagtttgacgatcacaagcaagccgcagaaattttattgcaggcagagcgtcagatggac
gaggcggcggtctacaccattcacggtttttgccaacgtatgctaacgcaaaatgcgttt
gaatctggcagccgatttaataacgagtttgtgaccgatgaaagtcacctaaaagcgcaa
gttgtagccgattactggcgccgaaatttctacccgttgccatttaccttggctggagaa
attcgccagctatggagctctccatctgtgttgttgtctgacatcagcaattacttaacc
ggtgcgccgttaagcctttctgttcctgcaatgaaaggcagtttggctgatcttcatact
gaaaatttgaaaaaaattgatgaattaaaagcacagtggcgagaaagccaagatgacttc
ttaacgctgatttcagattcagatattaacaaacgtagctacaccaaaaagtctctgccg
acgtggttggaggcggtaaacgcttgggcagcaacggaaaccacaggttacgattatcca
gacaagctggagaaattcgcgcaaaacgtcttgttggaaaaaacaccgaaaggcagtgcg
ccgcagcatgcggtatttgaagccattgaaacatttcttgccaacccaatcagcttaaaa
gcgccactgcttgctcatgcgattgaacattgtcgtgtgatgctggccaacgcgaaaaat
caaaaacagtggctctctttcgatgatttgctgacgcaactttctgcttctatcgatacg
gacgaaagcgagcttttagcggcgcgtattcgtactttgtatcctgtcgcaatgattgac
gagttccaagataccgacccgcttcaatacagtattttcagccgtatttatctgaacaac
ccggaatgtggtttgtttatgatcggtgaccccaagcaggcgatttatggctttcgtggc
gcagacattttcacttatatcaaagcgcgtaaccaagtaagtgcccactacacgttagga
accaactggcgttcaagtgccgatatggtgcaggcggtaaaccaagtatttgctttgcca
gacagtccatttatctacgattcggatattccgttcttacccgttaagtacagtcccaat
gccgaaaaacgcatttggactatgggtggccaaaagcaacccgcgctgacttattggttg
caagaagcggacgaaaaaccgctaccaaaaggcgagtatttgactcgaatggcagaggcg
gccgcaagccaaatccaaactattttgacgcaggctcaacaggggcaagcgtgtctggtg
aatggcgaaaaacagaaagcggttcaagcgggcgatatcgcggtgttggttcgaacaggt
agtgaaggtcgaatgatcaaacaagcgctagcagaccaaggtattgccagcgtgtacctg
tctaaccgagacagtgtgtttaccagttcggtggcgcaggatctacagcgtttgctgcaa
gcggtgctgacgccagaaaatgaccgtgcgctgcgtgcaagtcttgcttctgagctgttt
gccctcgacgcagcaagtttggatgcacttaataacgatgaaattgtgtgggaaaacgcc
gtaaacgaattcaaagaatatcgcaaactttgggttcaacgtggtgtgctgccgatgttg
cgcgcggtgatcagcaaacgccatattgccgagcgattactagaagaaggcgcgagttca
cagggtgagaatggtgagcgagtactcaccgatttaatgcacattggtgaactgcttcaa
caagccagtaatgaactggatagcgaccacggtctgctgcgttggctcgctcagtctatc
agtgatgcggaaaacggtttgggtggcagtgatgaccaaatccaacgtttagaatcggaa
cgtaacttagtgcagatcgtaactattcacaaatcaaaaggcttggagtatgacctcgta
tttctgccgtttgtgttcagctatcgagaagccagcgaagccaaatattacgatgcagcc
aatgaccgcacggtactggatatcacaggcaacgatgcgtccatgaagcaagcggataaa
gagcgtttggcggaagacttacgcttgatatacgtggcgttaacgcgtgctgtgtatgcg
tgttttatcggtgcctcacctttgcgcaatggccgttcgaccaaagagcccactggcgta
caccgctgtgcgattggctatttgattcaaaatggtcaagaaggtggcattaacgatttg
caccaaggtttaacaaagcaacaagacgagcttgattgtgtcgttgtggccgatccgccg
cagcaactcgaagagaagtacgtagcgccacaagaagaaatatacgatcttagcgcgaaa
gagctgcaaaaccctatcgacagaaactggcgcatcaccagttattctggcttggtcaag
caaggctctcatcacgccgagcatgatgccacgattgagattacgggttttgatatcgac
tcatctgaagagcaagacgaagcggatttggtggagccagagcgttctatttttaccttc
cctcgcggtgcgcgtccgggtacgttcctgcacagcctgtttgaggaaattgaatttact
cagccagccacgacggaagagaatacacaaatcatccttggtttgatggaaagcgaacag
ctcgatgaagagtggttgcccattttacaacaattgattgataccgtactcgcaacgccg
ttggatggtaagtctttgctgctgaatcaaaaagcaccgtcgcaacgtttggtggagatg
gaatttttgttgccgattgaagtgttgtcggcgccagcgttaaaccgagtcattcaacgt
cacgatccgttgtcggcgaaagcgggggatttaggtttccaaaccgtgcaaggcatgctc
aaaggttttatcgacttggtgtttgaacatcaaggtaaatactatgtgcttgactggaaa
tcgaatcatcttggcgacgatgtgacgcactaccatggtgaggctctgaaatcggccatg
gcggatcaccgctacgatctgcagtaccagatttatgcgttagcactgcatcgtttccta
cacagccgattggcgaattatcaatatgagcagcacttcggtggcgtgtattacttgttc
ttgcgcggcatggatgggcagagtgaccacggcatttttgccgcgaaaccaaccttagag
ttcttacaagagatggatcgtttgattgatggtcaagtacttgaaacgcgctcaactcaa
gccgggcagatggagctactttaa
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