Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_14605
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Entry
M634_14605 CDS
T02761
Name
(GenBank) c-di-GMP phosphodiesterase A
KO
K20965
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
M634_14605
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
M634_14605
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_4
PAS_8
PAS_9
PAS
Motif
Other DBs
NCBI-ProteinID:
AGQ91617
LinkDB
All DBs
Position
I:3030756..3032795
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AA seq
679 aa
AA seq
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MPSQQLQHWFATLTSNSPFFFAILDKKHNYRMVSDRYCDIAGLNHEEIIGLNDCQVLGEQ
FYKKLAPYYQRAFKGVHVEAEITLDETDLETSLHFSLSPVYEGNEVRFVVFHAVDTSEKQ
ILVRSLEEAENKFAKLTQLLPDGLLLIEDDIIISANPASARLLGLNSPHELLGEELSRLF
IDENTKKVFSHRLSTLISDKPFVCLTSARCGFERKVQLHADSTAILGSESQIILIQDADD
TPKHLSSASSEDSHIDSLTKLYNRFGFTKRLEQLIKSQTPLLVFYLDIDNFKNINDSLGH
HIGDKVIQEVSARLKRLLPNQAIIGHLGGDEFGIILPEPENSRMAEVLSDRIISLINQPF
DLHHFSKRLACSIGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARM
RLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGSFIPVAER
AGLIEHLGRVVMRDVFNTVKRWKQQGILPGRVAINLSPEQFGNPQLIDFMEKLLRTTELD
PSCITFELTESAVMSDSEHTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKID
RAFINDIDALPKQVTVIENIINLGKSLELTVVAEGVETHQQATLLSNLQCNSIQGFHFYR
PQPKHEIEELFVQNRRHKN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccagcaattacaacattggtttgccacgctaacctcaaatagccctttcttt
tttgccattcttgataaaaaacacaattatcgaatggtgagtgaccgctattgcgatatt
gcaggcttaaatcatgaagaaatcatcgggttaaacgattgccaggtgctaggtgagcag
ttttataagaagctggcaccttactaccaacgcgcattcaaaggcgtgcatgtcgaagct
gaaattaccttagatgaaaccgatttagagaccagccttcactttagtttgtcaccagtg
tatgaaggtaacgaggtacgtttcgtagtgtttcacgccgtcgacacctccgaaaagcaa
attcttgtccgctctctggaagaagccgaaaacaaatttgccaagctgacccaactattg
cccgatggcctgctgctgattgaagatgacatcatcatctcagcaaaccctgcctcggct
cgtctgcttgggcttaactcccctcacgagctgctcggtgaagagctctctcgcttgttc
atcgacgaaaacaccaaaaaagttttcagtcaccgactcagcacgcttatttcggacaaa
ccgtttgtttgcctgactagcgcgcgttgcggatttgagcgcaaagtccaattgcatgcg
gactcgacggcaattctaggcagtgaatctcaaattattcttatccaagatgcggatgac
acaccaaaacacctgtcgtcagcctccagtgaagattctcatatcgactctttaaccaaa
ctgtataaccgatttggtttcaccaagcgcctagagcaactgatcaaaagccaaacaccg
ctattggtgttttacctcgatatcgataactttaagaacattaatgactcgctgggtcat
cacatcggtgacaaagtcatccaagaagtttctgcgcgtttaaaacgactgctgccaaac
caagcgatcatcggccatcttggcggtgatgagttcggcatcatccttcctgagccagaa
aactcgcgcatggcagaagtgttatcagatcgcattatttctttgataaaccaacctttt
gatctgcaccacttcagtaaacgtcttgcttgctcaatcggtagcgtccgctatccggaa
gatgggcaggatgctcgtatcttgctacaaaacgccgataccgcaatgtacgaagcgaaa
gatcgcgggcgaaaccgtctgatcaaattcaatgaccaaatgaacaaagaagcgcgtatg
cgtttgtggctcgaaatcgaactgcaaaaagccctgcagcaaaatggtctcgaagtttgg
tatcagcccaaagtaaacgcccgtgatttcagtatcaatggcgcagaggctttagtacgt
tggaaacatccggttgagggctacattagcccaggatcatttattcctgtggcggaacga
gcaggtttgattgagcatctgggccgcgtggtgatgcgtgatgtattcaacaccgtaaaa
cgctggaaacaacaaggcattttgccgggtcgcgtcgcgatcaacttgtctccagaacag
tttggcaaccctcagttgatcgactttatggagaagctgctgcgcacaaccgaacttgat
ccaagttgcatcacgtttgagctaacggaaagcgcggtgatgagtgacagcgaacatacg
ctgcaaatgctgaatgcgattaaaaagttgggctttgctttgtcgatcgacgactttggt
actgggtattcctcactgtcgtatttagctcgtttcccgattgatgaactaaaaatcgac
cgtgcattcattaatgacattgacgccctgccaaaacaggtgaccgtcatcgagaacatc
atcaacttgggcaaatctttggaactaacagtcgttgcagaaggcgtagaaacgcatcag
caagctactttactttccaaccttcaatgtaactcgattcaaggttttcatttctaccga
cctcaaccaaaacatgaaatcgaagagttgtttgtgcaaaaccgccgccacaaaaactga
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