Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_14635
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Entry
M634_14635 CDS
T02761
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M634_14635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpf03019
]
M634_14635
03016 Transfer RNA biogenesis [BR:
vpf03016
]
M634_14635
Enzymes [BR:
vpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
M634_14635
Messenger RNA biogenesis [BR:
vpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M634_14635
Transfer RNA biogenesis [BR:
vpf03016
]
Prokaryotic type
tRNA degradation factors
M634_14635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
DUF3016
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AGQ91623
LinkDB
All DBs
Position
I:complement(3037926..3040061)
Genome browser
AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELNASRLDLVV
AGTESAVLMVESEADNLTEEEMLAAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEEN
TALKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTSTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
ALAGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPTEEAAAEAPAAKEE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagttgttaaaacgttccagtatggtaaccacacggttactctagaa
actggcgttatcgcacgtcaagctacagcagcagttatggttacaatggacgatacagca
gtattcgtttcagttgttggtaaaaaagaagcagtagcgggtcaagatttcttcccacta
actgtaaactaccaagagcgtacttacgctgcaggtaagatcccaggtggcttcttcaaa
cgtgaaggtcgtccatctgaaggcgaaacgctaacagctcgtctaatcgaccgtccaatc
cgtccactattcccggacgcgttcaaaaatgaagtgcaagttattgcaacggttgtatct
gtaaacccagacgttcaaccagatatcccaacaatgattggtacatctgcggctcttgct
atctctggtattccattcaatggtcctatcggtgcagcacgtgttggtcacatcgatggt
cagctagttcttaaccctagccaaactgagctaaacgcatcgcgtctagatctagtggtt
gcaggtacagagtctgcggtactaatggttgagtcagaagctgacaacctaactgaagaa
gaaatgctagcagcagttgtgttcggccacgatcaacaacaagttgtaatcaacgctatc
aacgagttcaaagctgaagttgctactccagcttgggattgggttgctccagaagaaaat
acagcacttaagactaagattgctgaacttgctgaagctaagcttgttgaggcttaccaa
atcactgagaaaatggctcgttacgaccgcatccatgagattgcagcagaagtaaacgaa
gcactgcttgctcaagatcctgaagcggatactaaagaaatccacacaatcttccacgat
ctagagaagactgttgtacgtcgtagcatcatcgcgggtaaccctcgtatcgatggtcgt
gagaaagacatggttcgtgcgctagacgtacgtactggtgttcttccacgtactcacggt
tctgcactgttcactcgtggtgaaactcaggccctagttactgcgactctaggtactcaa
cgtgatgcacaaatcatcgatgagctaactggtgagcgtaaagatcacttcctactacac
tacaacttccctccatactgtgtgggtgagactggtttcgtaggttctcctaagcgtcgt
gaaatcggccacggtaaactggctaagcgtggtattgcagctgtaatgccatctgttgac
gagttcccatacacagttcgcgttgtatcagaaatcacggaatctaacggttcatcttca
atggcgtctgtatgtggtacatctctagcacttatggatgctggtgttccaatcaaagca
tctgttgcgggtatcgcgatgggtcttgtgaaagaaggcgatgactttgttgttctttct
gacatccttggcgacgaagaccacctaggtgacatggactttaaagtagcaggtactagc
actggtgttactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagcacaaggcgcacgtaagcacatcctatctgtaatggatgaa
gcgcttgctggtgctcgtgacgatatctctgagttcgctccgcgtatccacacaatgaag
atcagcgcagagaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
actgaagagactggtacaactatcgaaatcgaagacgacggtacaatcaagattgcagca
actgaaggtgcagcagcgaaagaagctatccgccgtatcgaagagatcactgctgaagtt
gaagtaggccgtatctacactggtaaagttgctcgtctagctgactttggtgcgtttgta
acggttctaccaggtaaagatggtctagtacacatttctcaaatcgctgaaaaacgtgtt
gagaaagtgtctgactacctaactgaaggtcaagaagttcaagttaaagttcttgaaatc
gaccgtcaaggccgtgtacgtctaagcatgaaagaagcggtagagaagcctactgaagaa
gcagcggcagaagcaccagcagcgaaagaagagtaa
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