Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_15885
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Entry
M634_15885 CDS
T02761
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf02020
Two-component system
vpf02040
Flagellar assembly
vpf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
M634_15885
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
M634_15885
09142 Cell motility
02040 Flagellar assembly
M634_15885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpf03021
]
M634_15885
Transcription machinery [BR:
vpf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M634_15885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
IPPT
Motif
Other DBs
NCBI-ProteinID:
AGQ91808
LinkDB
All DBs
Position
I:3288139..3289605
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AA seq
488 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHEEPQANG
EDKSALETADNSANEPTEIEVPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDD
DMPVYQGETTESLHDYLMWQLDLTPFSETDRTIAIAIIDAIDDYGYLTLSPEEIHESFDN
EDIELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLAEAKMILADHIDHL
GNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTV
SINPDSIPKLKVNQQYAQLGKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVE
HQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHVST
DNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcattacaactcaagctaggtcaacagttagccatgacgccacagttgcaa
caagcgattcgcttgctgcagttgtcgactctcgatcttcaacaagaaatccaagaagcg
ttggactcaaacccgctattggaagttgaagaaggccacgaagaacctcaagcaaatggt
gaagacaaatcagcactcgaaactgctgacaacagtgctaacgagccaacagaaatcgaa
gttcctgatagttctgacgtcatcgaaaagtccgaaatcagctcagagcttgaaatcgac
acaacttgggatgatgtctacagcgcaaatacgggcagtaccggtttagcgttagacgat
gatatgccggtctaccaaggcgaaaccacagaatcgctgcacgattacttaatgtggcaa
ctcgacttaacgcctttcagtgaaaccgaccgtacgattgccattgccatcattgatgcg
attgacgattacggctatctgaccctatctcctgaagagattcacgaaagcttcgacaac
gaagatattgagttggatgaagtcgaagccgtgcgcaaacgcatccaacagtttgacccg
cttggtgtggcatcgcggaacctgcaagaatgcttactcctgcaacttgcaaccttccca
gaagacacgccttggcttgcagaagccaaaatgattcttgccgatcacatcgatcacctt
ggtaatcgcgattacaaactggtcatcaaagaaactaagctaaaagaagcggatctacgc
gaagtattaaaactgatccaacagttagatcctcgtccgggcagccgcattaccccagac
gacacagaatacgtcattccggacgtatcggtatttaaagatcatgggaaatggaccgtt
tccatcaaccctgacagcattccaaagttaaaagttaaccaacaatacgctcaattaggc
aaaggcaacagtgcggatagccagtacattcgcagcaatttgcaagaggcaaaatggtta
attaagagcttagagagcagaaacgagacgctactcaaagttgcaagatgtattgttgaa
catcaacaagatttcttcgagtatggtgaagaagccatgaagccaatggtactcaatgat
gtagccttggcggtggacatgcatgaatccacaatatctcgtgttacgacacaaaagttc
atgcatacgccacgtggcatttttgaattgaagtacttcttctccagccacgtcagtaca
gacaatggcggagaatgttcgtcaacagcaatccgcgcactcattaagaaactggtcgcg
gcagagaatactgctaaaccacttagtgacagtaagattgctgctcttctggctgaccaa
gggattcaggtcgcaagacgtacgatagctaaatatcgagaatccttgggtattgcccct
tcaagtcagcgtaaacgcctactttaa
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integrated database retrieval system
