Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_18385
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Entry
M634_18385 CDS
T02761
Name
(GenBank) 3-methyladenine DNA glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M634_18385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpf03000
]
M634_18385
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_18385
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
M634_18385
Transcription factors [BR:
vpf03000
]
Prokaryotic type
Helix-turn-helix
AraC family
M634_18385
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
M634_18385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AGQ92868
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All DBs
Position
II:491459..492826
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AA seq
455 aa
AA seq
DB search
MFIHPHTSLTFEQCQKARVSRDSRFDGRFYVAVKTTGIFCRPICPANLPKEENVEYFTDK
AQALKAGYRPCLRCRPDSAPGSWAWKGVETTFQRAISLIDRGELHHHSVSELAERVGISD
RYLRMLFEQYLGMSPKQYAQYQQLMFAKQLLHSSSMSVTEVGFAAGFNSTRRFNDAFQKF
LKLTPSQVRRREFDGVSTNRIALSYRGELNWQHMLDFYRLRAIEGVERVSGESYQRNVCL
DNSKAWFKASKGEGNLELEFEIEEVAKLQNLVSGVRRMFDLDTDICTVEQHLDYVAPGLV
SNRGIRIPGVWNAWEAGVRAVLGQQVSVKAAIGQLNLLVKTLSGDADKRFFPTPDAIANA
DVSFLRMPQSRKETLVRFAQFMQSNAETDPQQWLALKGIGPWTVSYAQLRGQSQPDCFLD
KDLVVKKAMQRYPSLNTHTAAPWGSYATFHLWNQS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtttatccatcctcatacatcgttgaccttcgagcagtgccaaaaggcgcgagtgtcg
cgagacagccgttttgatggtcgattttacgtcgcggtaaaaaccacagggattttctgc
cgaccgatttgtccggcgaacctacccaaagaagaaaatgtagagtacttcaccgataaa
gcccaagcacttaaagcgggttatcgtccttgtttgcgttgtcgcccagacagcgcgccg
ggatcgtgggcatggaaaggcgtagaaacaacatttcaacgcgcgatttcgttgattgat
cgaggagagctgcatcaccactcggtgtctgaactggctgaacgcgttgggatttctgat
cgttacttgcgtatgttgttcgagcagtatctcggcatgtcaccaaaacagtacgcgcaa
tatcagcagttaatgttcgccaaacagttgctgcattccagttcgatgtcggttacggaa
gtcggcttcgccgccggttttaacagcacgcgccgtttcaacgatgcattccaaaagttt
ctgaagctcacgccttctcaagttcgtcgaagagaatttgatggcgtgagcacgaatcga
attgcgttgtcttatcgtggcgagttgaactggcaacacatgctggatttttaccgatta
agagccattgagggcgtggagcgggtgagcggcgagagttaccaacgcaacgtttgtttg
gataacagcaaagcgtggtttaaggcgagcaaaggtgaaggaaaccttgagcttgaattc
gaaattgaagaagttgcgaagctgcaaaatttagtgtctggagtgcgtcgtatgttcgat
ctcgacaccgatatttgtactgtcgagcagcatttggattatgtggcgccggggcttgtt
tcgaaccgaggcattcggattcctggggtgtggaatgcttgggaagccggggttagagca
gttttgggtcaacaagtgtcggtcaaggccgcgataggccagcttaacttattggtaaaa
acgctcagtggtgatgctgacaagcgctttttcccgacgccagatgcgattgcgaatgcc
gacgtgagttttttgcggatgccgcaaagtcgtaaagagacgttggtgcgtttcgctcag
tttatgcaaagcaacgcggagacggatccgcaacaatggttagcgctgaaaggcattgga
ccttggacggtcagttatgctcaactgcgtgggcaatcccaacccgattgctttttagat
aaagacttagtggtgaaaaaagcgatgcagcgctacccatcactcaatacgcacaccgca
gccccttggggaagctacgcgacgtttcacttatggaatcaatcatga
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