Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_18465
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Entry
M634_18465 CDS
T02761
Name
(GenBank) pseudouridine synthase
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpf03009
]
M634_18465
03016 Transfer RNA biogenesis [BR:
vpf03016
]
M634_18465
Enzymes [BR:
vpf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
M634_18465
5.4.99.29 23S rRNA pseudouridine746 synthase
M634_18465
Ribosome biogenesis [BR:
vpf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
M634_18465
Transfer RNA biogenesis [BR:
vpf03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
M634_18465
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
PKcGMP_CC
SPT6_acidic
Motif
Other DBs
NCBI-ProteinID:
AGQ92883
LinkDB
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Position
II:complement(508026..509705)
Genome browser
AA seq
559 aa
AA seq
DB search
MHSPEHCFTRFTADTSGYELPTQFTFPFYYTPHPLCVIAAKQLQQHLLAQTDFEHDFGLV
NEEAGRGKMFGVLLVKSPQGELGFLSAFSGKIADQNLIPGFVPPVYDMLTDEGFFRVETD
AINAANAEYKTCAANPELAELKVQIQADRAAYQQEEQTQRQVMIDGRAARKRQRQQGEQT
LNADEFKILLDALGKQSVAEKNVLKYLKQAWDEKLAIKEARLAELEQQLAHLKEQRKTLS
NALQHKLHKQYRFLNNHGEARDLVDIFADTTNPIPPAGAGECAAPKLLQYAFKHGFKPLA
LAEFWWGVSPKSEVRQHKKFYPSCNSKCQPILDHMMQGLDVEPNPLAENWAEDKELEIIY
QDDAMVVVNKPSGLLSVPGKTIKDSAYTRLQAMFPDVEGPFVIHRLDMATSGILVFALTK
RANKSLQKQFMARGVQKRYMALLEGVLNEPEGEISLPMRGDPDDRPRQLVCFEHGKHAET
YWQLIEVKDGRSKVYMYPKTGRTHQLRVHSAHHMGLNMPMVGDGLYGEKANRLHLHAEML
ELDHPYSKERMVFKAECEF
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcactcgcctgaacattgttttactcgttttactgctgacacttctggctatgaattg
ccaacgcagtttacgtttccgttctactacacgccgcatccgctttgcgttatcgccgca
aagcaattgcaacagcacttattagcgcaaaccgacttcgaacacgattttggtttggtt
aatgaagaagcggggcgaggcaaaatgtttggcgtattgctggtaaaaagccctcaaggc
gagctcggctttttaagtgcgttttctggcaaaattgctgaccaaaacttgattccagga
tttgtccctcctgtgtacgacatgctgaccgatgaaggcttcttccgcgtagaaacggat
gccatcaacgccgccaatgcggagtacaaaacctgtgccgcgaatccggaattggcggag
cttaaagtgcaaatccaagccgaccgagccgcttatcagcaagaagaacaaacacagcgc
caagtgatgattgacggccgcgcagcacgcaaacgacagcgccaacagggcgagcaaacg
ctcaatgccgatgagttcaaaatcttgctggatgcgttgggtaaacaaagtgtcgccgaa
aaaaacgttctcaaatacttaaagcaagcctgggatgaaaagcttgcaatcaaagaagca
cgcttggccgagttagagcagcaacttgctcacctgaaagagcagcgcaaaacgctgtcc
aacgctttgcagcacaaattgcataaacaataccgcttcctaaacaaccatggcgaagca
cgcgacttggtggacatttttgcggacacaacaaacccaatcccaccagcaggtgcaggg
gaatgtgctgcgccaaaactgctccaatacgcgtttaaacacggattcaaaccgctggcg
ctggcagaattttggtggggagtttcgccaaagtctgaggttcgccaacacaaaaaattc
tacccatcgtgcaacagtaaatgtcagccgattttagaccatatgatgcaagggctggat
gtcgaacctaaccctttggcggaaaattgggcagaagacaaagaactggaaatcatctac
caagacgacgcgatggtcgtggtcaacaaaccctcgggcttactttcggtgccgggtaaa
accatcaaagactccgcttatacgcgcctgcaagcgatgttccctgacgtggaagggccg
tttgtgattcatcgtctcgacatggcgacctctggcattttggtgtttgccttaactaaa
cgcgcgaacaaaagtctgcaaaaacagtttatggctcgcggtgtgcaaaaacgttatatg
gcactgctcgaaggcgtattaaacgagccggaaggggaaatctcactgccaatgcgtggc
gaccctgacgatcgcccacgtcaactggtgtgttttgaacacgggaaacatgcagaaacc
tactggcaactgattgaagtcaaagatggacgcagcaaggtatacatgtatccgaaaacc
gggcgaactcaccaactacgtgtacacagtgctcatcacatggggttaaacatgccgatg
gttggtgatggtttatacggcgaaaaagcgaatcgcttacacttgcatgctgagatgcta
gagctggatcatccatacagcaaagagcgcatggtgttcaaagctgagtgcgaattctaa
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