Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_21100
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Entry
M634_21100 CDS
T02761
Name
(GenBank) diguanylate phosphodiesterase
KO
K20966
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
M634_21100
Enzymes [BR:
vpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
M634_21100
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
HAMP
GGDEF_GdpP
Motif
Other DBs
NCBI-ProteinID:
AGQ93310
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All DBs
Position
II:complement(1066664..1069027)
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AA seq
787 aa
AA seq
DB search
MKLSNRVILLVAPVIILSALVSSYIIYSIQKVTLIKREDSYIQLQMEKLAGQFRQANIFL
NSYAYTLSKSDVLQDYFINHDNPYRERVLFSRLDETADVLSHGYKGDASMAILDGKQNLL
YYTENQYYESSGVVDPKVLEYIATSFAARGEYSHTGFIYNSSGQSILLRYELIDKRTGAP
PVSFDPSNVFFVVVSVSLEVFNDIKHDVEFDTHSVITFSDKPIYLDIPLAQTIELLPHFY
AVLSPAEYLMWNKVDKVWLELALSFGIAAFCTITLIVLVLYRYVLHPVSRLDKQLSELES
NQRDNIEKLGTNDEIGRLSSRFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATR
ELASPPSHLWVIYVDLDNFKYVNDKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGA
RLSGDEFAILLSSNKDVGSIPDLLAKELLKPISNLSQTWANAFPVTASVGIAQYPQDGQD
IAKLLSNADAAMYQAKRAGKNQYAYYSAELNLESQRRSQIERALRKSNVEDEFRLVFQPY
MNNKDNEIEGLEVLLRWDAEGLGPVPPTEFIPIAEQAGLFDKIDRWVFANATEEYHHLRS
IFGKDIVLSINLSSAELNSLEMAQFIHKHVTRNGIKPECIELEITETFAAEQQGTALLDE
LSKLGYRLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLLTLMNTNNGHVIKPIIELCHAQ
NKTVTAEGIEHDVMHKWLSAYRCDFMQGYLFGKPMDKEQLSLWWKSANDDNRFSQPLTTK
LAAEGGI
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaagcaatcgagttatcttgcttgtcgcacccgtgatcattttgagtgcgctg
gtatcgagttacatcatctatagcattcaaaaagtaacactcatcaagcgcgaagatagc
tacatacaacttcagatggaaaaactggcggggcaatttcgacaagccaatatttttctt
aacagctatgcgtacacgctgagtaaaagtgatgtgctgcaggactattttatcaatcac
gacaatccctaccgtgagcgagtactttttagccgcctagatgaaaccgctgatgtcctg
agccatggttataaaggggatgcgagcatggcgatcctcgacggcaagcaaaatctgctt
tattacaccgaaaaccaatattacgaatcgtccggcgttgttgacccaaaggtgctggag
tacatagcgaccagcttcgcggctcgtggtgaatacagccacacagggttcatttataac
tccagtggccaaagcatcttgttgcgatacgaactcattgataaacgaacaggcgcaccg
ccagttagcttcgatcctagcaacgtgttttttgttgtcgtgtccgtatctttagaagtg
tttaacgacatcaaacacgacgtcgaatttgatactcatagtgtgattacgttttccgat
aaacccatttatctagacatccctcttgcgcaaaccattgaacttctgccccacttttat
gcggtgctctctccagcggagtatctgatgtggaacaaagtggacaaagtatggctagag
cttgcactttcttttggtatcgcggcattttgtaccataacgctgatcgtcttagtgctc
tatcgttacgttttgcatccagtctctcgcctcgataaacaactcagtgagctagaatcg
aatcagcgagacaacatcgaaaagctcggaaccaatgatgaaattggccgtctttcatca
cgcttttttgatatgtacgaagaactcaacgtcatttacaaaaagaccaaacgtctcgca
gaaactgatcaccttactcagttggctaaccgtcatcgattccaccaacttgccacgcgt
gagttggcctcgccaccttctcatttgtgggtgatttatgtcgatctggataacttcaag
tacgtgaacgataaatatggccatgaacttggcgacaacctgctaaaggtcttctcgact
cacattaaaaacgcctgtcaaaagttctctcagcaatacgacagcccttgttttggcgcg
cgtttatctggtgacgagttcgccatcctactcagctccaataaagacgtaggcagcatc
ccagatttactcgccaaagaactattaaaaccaattagcaacctcagccaaacttgggcg
aacgccttcccggtgaccgccagtgttggcatcgctcagtacccgcaagatgggcaagac
atcgcgaaactgttgtccaatgcagacgcagcaatgtaccaagccaaacgtgctggaaaa
aatcagtacgcgtactattcagcagagctaaatttggaatctcagcgacgcagtcagatc
gaacgtgcactgcgtaaaagcaacgttgaagatgagtttaggcttgtgtttcagccttac
atgaataacaaagacaacgaaattgaaggcttggaagtgcttctacgttgggacgcagaa
ggcttggggccagtgccaccaaccgaatttattccaatcgccgagcaagctgggttgttt
gacaaaatagaccgttgggtgtttgccaatgcaaccgaggaataccatcatttaagaagc
atttttggcaaagacattgtcctgtccatcaacctttcatcggccgaattaaactcgtta
gaaatggcgcaattcattcataaacacgtaacgagaaatggcatcaaaccagaatgtatc
gaactagaaattaccgagacgtttgccgcggaacagcaaggcactgcattgcttgatgag
ctttcgaaactgggttatcgacttgctattgatgatttcggctctggctacacgtcactc
actcaacttgttcaatatccagtacaaaagattaagtttgaccgagaatttctactgacg
ttgatgaataccaataatggacacgtgatcaaaccgatcattgagctgtgccatgctcaa
aacaaaaccgtgaccgccgaaggcattgaacacgacgttatgcacaaatggctgtccgct
tatcgatgtgatttcatgcaaggatacttgttcggaaagccaatggacaaagagcaactt
agcttgtggtggaaatcggccaacgatgacaatcgattctctcagccgcttacaactaaa
ctcgcggctgagggtggaatttga
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