Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_23030
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Entry
M634_23030 CDS
T02761
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_23030
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M634_23030
Archaeal homologous recombinant proteins
M634_23030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
nSTAND_NTPase5
Phage_glycop_gL
nSTAND3
GTP-bdg_N
Motif
Other DBs
NCBI-ProteinID:
AGQ93606
LinkDB
All DBs
Position
II:complement(1490479..1493535)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAKTETIDFEKLGSNALFLINGPTGSGKTSILDAICFALYGETTSNE
RQGIQMRCDLASPQLLTEVTLDFSLHGKVYRVTRAPEQEAPKARGEGLTVRKHTASLYEL
GETEKLITSKTTQVKTEITNIIGLNETQFRQVMVLPQGKFRELLLATSKEREEIFGQLFE
TDIYKKIEYALKDKASSISKAKDEFDNQIRGALQVAGVTSEAELTEQRETLSVQFASAQK
REQESLAQLNAVKTEIQKAETLSNEFKKREQAEAALHLHLQQTETISAHQLQLDNAKKAS
RIELPYIKLQNAAQQVQDLNQKVAVLSQDLKAADDVLKTKEQAFQQAKEQANRVPRLTEQ
QYQLESMKGKLVEKVELDSAIAAGLQQKSEFEETLKKYIVFREKLTQDALQAQKVLEQAR
IDVASIGSVDAEIKQQQRLMSDLQKLGNLNQELSKLDVLTSSKQASVTQAKSYYENLQRE
ADALELSWHNAQAAVLALRLQTGEQCPVCGSTEHPQPAQFVGDEVTKEQVQQARHKEREA
QITLNQLSNQLEQHNIAIAQYTQQIEQMVSELGQNANLELQALQASIHQLNERLQHLNAM
NIAQLEQSVNELNQRCLVGEGKINDLQNQMAANESTIKANQQQLAKLSASLGDKYTSLAQ
LENDLTQIHKQIVELNNGLESAQVQLQQAVLAKSNVDSQLTTHQQWLLEANSKLEDAKTE
WESALKASAFADEAHFLQSKVSEQQTQTWQQEIDNFKQTQIQLEQTLADLNQALKEVEKP
NLEALNGSLSTAQHSYLEIRNQLDSTRSLFEGLEKVRNEISNLHDKNRKLEEEYKVFGTL
YDVASGKTGSRISLHRFVLGVLLDDVLIQASQRLSLMSKGRYILARKTEGFKGAAGRGLD
LVVEDGYTGKMRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQTGRMIGVISHVSELKEQMALRIDVEPSRFGSTVSVKSQMLLSK
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatcaaactcacgatgcaagcctttggtccgtttgcgaaaacagaaactatt
gattttgaaaagcttggaagtaatgctttatttttaattaatggacctactggttcaggt
aaaacctcgatcttagacgcgatttgctttgcgctatatggcgaaaccactagcaatgaa
cgtcaagggatccaaatgcgctgtgatttagcatcgccacagttgctaaccgaagtaact
ctagatttctctttgcatggcaaagtttaccgagtgactcgcgcgccggagcaagaagct
ccgaaagcccgtggtgagggcttgaccgttcgcaaacacacggcgtcattgtatgaattg
ggtgagacagaaaaactcatcaccagcaaaacgacccaagttaaaactgagatcactaat
attattggtttgaacgaaactcagttccgtcaggttatggtattgcctcaaggtaaattt
cgcgagctgttattagcaacgtctaaagagcgtgaagagatctttggccagttgttcgaa
acggatatctacaaaaagattgaatacgccttaaaagacaaagcaagctcgataagcaaa
gcaaaagatgagtttgataaccaaattcgtggcgcgcttcaagttgcgggagtgacatca
gaagcggaattaacagaacaacgtgaaacgctgtctgtccaattcgcgtcagcgcaaaag
cgagagcaggaatcgcttgctcagttaaatgccgtgaaaacagaaattcagaaagctgaa
acgttaagcaatgaatttaaaaagcgtgaacaagcagaagccgcgctccacctgcacttg
caacaaactgaaaccatttcggctcaccaactgcagttagataatgcgaaaaaggcgagt
aggattgaactgccttatatcaagctgcaaaatgccgcccagcaagttcaagatttaaac
caaaaggttgccgttctttctcaagatctaaaagccgctgacgacgttttaaaaacgaag
gaacaagccttccaacaggcgaaagaacaagcgaatcgtgttcctaggctgacagagcag
caataccaacttgaaagcatgaaaggcaagttggtcgagaaggttgagctggatagcgcc
atcgctgcaggactacagcagaaatcagaatttgaagaaacgctaaaaaaatacatagtg
tttagggaaaaactgacgcaagacgccctgcaagcgcaaaaagtgttggagcaagctcgc
attgatgtcgcaagtattggtagtgtggatgcagagatcaaacagcagcagcgtttgatg
tcggatcttcaaaagttaggtaacttaaatcaagagctttcaaagctagatgtattgacg
tcaagtaaacaagcctcggtaactcaagccaagtcttattatgaaaaccttcaacgtgaa
gcggatgcgttagagctcagttggcataatgcgcaagcagcagttcttgctcttcgttta
caaactggagagcagtgtcccgtttgtggtagtaccgaacatccccaacctgctcaattt
gttggtgatgaagtcacaaaagagcaagttcaacaggctcgtcataaggagcgtgaggct
caaatcacgctgaaccaattgagcaaccagttggaacaacacaatattgcgattgctcaa
tacacacagcaaattgagcaaatggtttcggagttggggcagaacgcgaacctagagctg
caagcattacaggcatcaattcatcaactcaatgaacgattacagcatttgaacgcaatg
aatattgctcagcttgagcaaagcgtgaacgagttgaatcaacgttgtttggttggcgaa
ggtaagatcaacgatttgcaaaaccagatggctgcaaatgaatcgacgattaaagcaaat
cagcagcagttagcgaaattgagtgcgtcattaggtgataaatacacatcactagcgcaa
ctagaaaacgacttgactcagatacacaagcaaattgttgagttaaataacggcctagaa
tctgcgcaagtgcagttacaacaagctgtgctggcgaaatcaaatgtcgatagtcagttg
acgactcaccaacagtggctgttggaagcgaatagtaaactggaagatgctaaaaccgaa
tgggaaagtgcactaaaagcgagtgcatttgctgatgaagcgcacttcttacagagtaaa
gtgagtgaacaacaaactcaaacttggcaacaagaaatagataactttaagcagacacaa
attcagttagaacaaactcttgcggatttaaatcaagctttgaaggaggtcgagaagcct
aatttagaagcgcttaacgggagtttaagcactgctcaacattcgtatctagaaattaga
aatcagctggatagcacgcgttcactgtttgaaggtttggaaaaagttcgcaatgaaatt
tctaatctgcacgataaaaaccgtaaattagaggaagagtacaaagttttcggtacgctt
tatgatgtcgccagtggtaaaacgggcagccgtatcagtttacaccgatttgtgttgggg
gttttattggatgatgtgttgattcaagcttctcaacgactgagtttgatgagcaagggt
cgatatattctagcgcgtaaaacagagggttttaaaggtgctgcagggcgaggacttgat
ctcgtggtggaagacggttacaccggaaaaatgcgtgatgttgcaacgttgtcgggggga
gaatccttcatggcagctttagctttggcattaggcttgtctgatgtcgtgcaatcttac
agcggtggaattcgtttagatacgttattcatcgacgaaggctttggtagcttggaccct
gaatctctcgatctggcgattcaaacattggtcgacttgcagcaaacgggccgcatgatt
ggcgtaatttcacacgtgtctgaactcaaagagcagatggcgttgcgaatcgatgttgaa
ccgtctaggtttggttctaccgtttcggttaaatctcagatgctattatctaaataa
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integrated database retrieval system
