Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_23500
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Entry
M634_23500 CDS
T02761
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M634_23500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpf03019
]
M634_23500
03009 Ribosome biogenesis [BR:
vpf03009
]
M634_23500
Enzymes [BR:
vpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M634_23500
Messenger RNA biogenesis [BR:
vpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M634_23500
Ribosome biogenesis [BR:
vpf03009
]
Prokaryotic type
rRNA helicases
M634_23500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGQ93681
LinkDB
All DBs
Position
II:complement(1594678..1596609)
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AA seq
643 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLDQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFADLVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAANKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRREGGFRGNREGGNRGGERREGGRREGGFRGN
RDGNREGNREGGERRFDRNRGGDHRGNYRGERGHGRGRRTQDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaagctagatcttgatcaacgtaaaccacaagcaatcgttctt
gctccaactcgtgagctagcgattcaggttgcggctgaaatgaaaaaccttggtaaaaac
atcaagggtcttaaagttctagaaatttacggtggtgcatctatcgtagatcaaatgcgt
gctcttaaaaatggtgcacacgttattgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgtctacatttagacgaagtaaatactttcgttcttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctcctgaatca
gctcaacgcgttctattctctgcaactatgcctccaatgctgaaaaacattgttgagcgt
ttcctacgtgatcctgtaatggttgacgttgctggtaaaaaccacactgtagacaaagtt
caacaacagttctgggtagtgaagggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggctttaaagctgctgcactgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgtagctcgtggtcttgacgttccacgtatcactcacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggccgtactggccgtgctgga
cgtaaaggtaaagcgatccttctagttcgcactaaccaaatccgtatgcttcgcactatc
gagcgcgtaactaagtcatctatggaagaaatccaacttcctctacgtgaccaagtagca
gaagctcgtctaaacaagctagcggctgaactggaagcagagaaagagcacaaagcacta
gacaagttcgcagacctagtagagaaactacaaacttctctagaaatcgaccctgcgatg
cttgctgcaatgcttcttaagcgtcaacaaggtaagcgtcctctgttctacattggcgaa
gacccaatggttgaagcgattgaacgtgacaagcaacgtcgtaaagagcgccgtgaaggt
ggtcgtgaaggcggtcgcagcttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagatatcgttggtgctctagcaaacgaactaggc
ctaggtaaaggttctatcggtgcgatcaagctagcgcaaggtcacacattcgttcagcta
ccaaaagcaatgacttctgaagcggcgaacaagctaagcaaactgcgtatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgacgatttccgtgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgaaggtggtttccgtggtaaccgcgaaggt
ggcaaccgtggtggtgagcgtcgtgaaggcggtcgtcgtgaaggtggtttccgtggtaac
cgtgacggcaaccgcgaaggtaaccgtgaaggtggcgaacgtcgtttcgatcgtaaccgt
ggtggtgatcaccgtggtaactaccgtggcgaacgtggtcacggccgtggccgtcgcact
caagacgcataa
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