Vibrio pelagius: LZI70_03505
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Entry
LZI70_03505 CDS
T08558
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpg
Vibrio pelagius
Pathway
vpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZI70_03505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpg03019
]
LZI70_03505
03400 DNA repair and recombination proteins [BR:
vpg03400
]
LZI70_03505
Enzymes [BR:
vpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZI70_03505
Messenger RNA biogenesis [BR:
vpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZI70_03505
DNA repair and recombination proteins [BR:
vpg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LZI70_03505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTT85362
LinkDB
All DBs
Position
1:817585..819519
Genome browser
AA seq
644 aa
AA seq
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MIEQKLKQVFGFDSLRYGQKQVIDNVLAGQSAAAIFPTGSGKSLCYQLPALELPHLTLVI
SPLLALMKDQLSFLHSKGIAAAAIESSQDRQTTQRVMQSVRNGETKILMISVERLKNERF
RQFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPHYQKQLNIPQVLLLTATATTGVIQD
MQSKFNIAPESVVVTGFYRKNLDLAIQPCEQETKLETLCEVVNQAPQSPTIVYVTLQQTA
ENVAQALRNVGINAIAYHAGLKPENRDAIQQQFMSDEISCIVATIAFGMGVDKSNIRRVI
HFDLPKSIENYSQEIGRAGRDGQNSECILLANKHGLSTLENFVFGDTPDNIAIQTVLQEI
YACQPSGNTYATQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGIIEPKYSFFADYKFKFV
RPKPQIIDQFQGERRAFVESIFQCSPQARVWCQVDFDALWTHFQADRQRVIAAIDYFNEQ
GWIELESKQITDVYAVHNTSEDPNEVAQRLSALFKQKEDNEIGRLNYMLDFFESSSCLSS
KLANYFGDLNAPQECGHCSACRGNAAKLPDVTLTAIDESDLQAWINEFISSSPQWVTDEA
ITRFLSGIATPLSTKLKASKMAGYGKLEQHPFRDTLALVQRIPR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacagaagctaaaacaggtctttggattcgactcactgcgttatggacaaaag
caagttatcgataatgttctagcaggccaatcggcagcggcaatttttccgaccggatca
ggtaaatctctctgttatcagcttccggcgctagagttgccccatctcactttggtgatt
tcccccttacttgcacttatgaaagatcaattgagttttctacacagtaaagggattgct
gccgcggccatcgagtcgagccaagacagacaaaccactcaacgagtgatgcagtccgtt
cgcaatggcgaaaccaaaatcttgatgatctccgttgagcgcctcaagaacgagcgcttt
cgacaattcatctcacaggtacctatctcgcttctagtggtcgacgaagcgcactgtatc
tcagaatggggtcacaacttccgacctgactatctcaagctgccccactatcagaaacag
ctcaacattcctcaagtccttttgctaaccgcaacggcgacaacgggagtgattcaagac
atgcagagcaagttcaacatagctccagagagtgtcgtagtcaccggcttttatcgtaag
aacctcgacttagcgatacaaccttgtgagcaagagacgaagttagagactttatgtgaa
gtggtcaatcaagcgccacaatcgccgactattgtttatgtgacgcttcagcagacagca
gagaatgtcgcgcaagccctcagaaatgtcggtattaatgcgattgcctaccatgccggt
ctcaagccagaaaaccgcgatgccattcagcagcagtttatgagcgatgaaatcagctgc
atcgttgcgaccatcgcgtttggtatgggtgtcgataagtcgaatattcgccgagtgatt
cactttgatctgcctaaatcgatagagaactactcccaagagattggacgtgccggtcgt
gacggacaaaactctgaatgtatactgctcgctaataaacacggcctcagtacgctagag
aactttgtctttggtgatacacccgataacatcgcgattcaaaccgtgctgcaagaaata
tacgcttgtcagccctctggcaatacctacgctactcagtgggaaatcatgctcaatcag
ctctctcgcgaatccaatattcgtcagctgccactgaaaacactattagtgtaccttgag
atcgagggcatcattgaacccaaatacagtttcttcgccgattacaaattcaagtttgtt
cgaccaaaaccacagatcatcgaccaatttcagggagagcgccgtgcgtttgtggagtcg
atcttccaatgctcaccgcaagctcgtgtttggtgccaagtggacttcgatgcattgtgg
acgcactttcaagcagacaggcagcgagtgatcgcagcaatcgactactttaatgagcaa
ggttggattgagctggaaagcaagcaaatcaccgatgtgtatgcagtacacaataccagt
gaagacccaaatgaggttgctcagcgtctgtcggcactgtttaaacaaaaagaggacaat
gaaattggccgcctcaactatatgttggatttctttgaatcaagcagctgcctgagttca
aaactcgccaactactttggtgaccttaatgcaccacaagagtgtggacactgctcagct
tgtcgtggcaacgccgccaagctacctgatgtaacgttgacggcgattgacgagagtgac
cttcaagcttggataaatgaattcataagtagcagcccacaatgggtaacagatgaagca
attactcgcttcttatcgggtattgcaacgccactgtccaccaagctcaaagccagtaag
atggctggatatggcaagcttgaacagcaccctttccgcgataccctcgctctggttcaa
cgaattccaagatag
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