Vibrio pelagius: LZI70_04560
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Entry
LZI70_04560 CDS
T08558
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vpg
Vibrio pelagius
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpg03009
]
LZI70_04560 (srmB)
Enzymes [BR:
vpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZI70_04560 (srmB)
Ribosome biogenesis [BR:
vpg03009
]
Prokaryotic type
rRNA helicases
LZI70_04560 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_11
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UTT85554
LinkDB
All DBs
Position
1:1064459..1065691
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AA seq
410 aa
AA seq
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MIRTFAELDLEQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP
ALQYLLDFPRKKAGPARMLILTPTRELAMQIADQARDLAKYTSLNIFTITGGVMYQEHAD
ILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWR
KQTLLFSATLEGKGVEGFTEDLLNNPAEIDAKSSLRERKKITQWYHRADTAEHKLDLLKH
IITEQAERTIVFLKTRERLADLRAQLESAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVL
LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISLIEAHDQPMIER
VARYTKESIKERFIEGMRPTHKKPVFKKKKKVKKDDKKGAAKKNAKKKKK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
gtgatcagaacctttgcagaactcgatctagaacaagagctgcttaaagcaatcgacgag
atgggctacgaacgcccaacacagatacaagctgaagcaatcccacaagcgttagatgga
cgagacgttttagcttctgcaccgacaggtactggtaaaacagcttcttttgtactgcca
gctttgcaatacctgctcgacttcccacgtaagaaagcgggcccagcacgtatgctgatc
ctaacgccgacacgtgagctagcaatgcagatcgcagaccaagctcgtgatcttgcaaaa
tacaccagccttaatatcttcaccattactggtggtgtgatgtaccaagagcacgcggac
atcttaggcacgactcaagacatcgttgttgcgactccaggccgtctgatggagtacatc
gaagctgaacgctttgattgtcgtgctatcgaatggctgattctagacgaagcagaccgt
atgctcgatatgggctttggcccagttgttgaccgtctatctgcagagtgtcgctggcgt
aaacagacgctactattctcggcaaccctagagggcaaaggcgttgagggcttcactgaa
gatctactaaacaacccagcagagatcgatgccaaatcttccctgcgtgagcgtaaaaag
atcactcagtggtaccaccgtgcagacacagcagagcacaagctggatcttcttaagcac
atcatcactgaacaagcagagcgtactatcgtgttcctaaaaacacgtgagcgcctagcg
gaccttcgagctcaattagagagtgcccagatcccatgtgcttggattcaaggtgaaatg
ccacaagatcgccgtaacaatgcgattgctcgtttccgcgatggcactgtgaatgtacta
ctggcaactgacgtagcagctcgtggtatcgacctaccagacgtgagccacgtaattaac
tacgacatgccacgtactgctgatgtttacctgcaccgtattggccgcactgctcgtgct
ggtaagaaaggtaatgctatctcgctaatcgaagcgcatgaccaaccaatgattgagcgt
gttgcacgctacaccaaagagagcatcaaagagcgcttcatcgaaggtatgcgtcctacg
cacaaaaaacctgtcttcaaaaagaagaaaaaggtgaagaaagacgataagaaaggcgca
gctaaaaaaaacgctaagaaaaagaagaagtag
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