Vibrio pelagius: LZI70_05265
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Entry
LZI70_05265 CDS
T08558
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vpg
Vibrio pelagius
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpg03021
]
LZI70_05265 (rapA)
Transcription machinery [BR:
vpg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LZI70_05265 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Apolipoprotein
Cas3-like_C_2
AAA_34
Helicase_RecD
Helicase_C_2
CC_BshC
Motif
Other DBs
NCBI-ProteinID:
UTT85685
LinkDB
All DBs
Position
1:complement(1236181..1239090)
Genome browser
AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVAMDARTVTLMFAASEENRVYARTDAPVTRVTFNVGDV
IECQEGWSLSVEEVIEEQGLFTYLGTRQDTEESGVSLREIFLSNQIRFNKPQDKLYAGQI
DRMDNFVLRYRALSNQYQQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCIEAFA
ESDNPFDTQQYVLCSLDFLRKSRKRYEQALEGEWDLLVVDEAHHLEWSQDKPSRQYQVVE
GLAENTPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYDAFVEEEEQYAPVADAVTALF
SGIKLENSQKNQITELLSEQDVEPLFRVIEGDSPEEEQAIARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPKRNVHLLPMEIPSQYTTSMRVSGMIGGKMTPEARAMKMLYPEEIFQEFE
GEESSWWQFDSRVNWLLEKIQEKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQQRDIDIHVPYLKGTSQAILARWFDEGLNAFGETCPTGRTVYDKYAENLIEMLASGN
TEQLDEVIEESAKLNQSLKADLEKGRDRLLEMHSNGGEKAAEIAEKIASTDGDTNLVTFA
LSLFDTIGLNQDDKGENALVVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMNFISW
EHPMIQGGIDLLLSEGVGTSAVSLLKNKALPVGTILLELVYLVDAQAPKRSGISQFLPKT
PIRLMMDGRGNDLSSQVEFEGFNRQLSPVNRHLASKLVNSVQADIHKLIEAGEAQVLPKV
EEVREQAQKEMQANLNGELERLQALKAVNPNIRDEELQVIETQIEELTGYIAKAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttggggcagcgctggataagcgatacggagagcgatttaggtttaggt
accgttgtagcaatggatgctcgcacagtgacactcatgtttgccgcgtcagaagagaat
cgtgtttatgcacgcactgatgctcccgtaacccgagtaacgtttaatgttggcgatgtt
attgaatgtcaggaaggctggtcactgtcggttgaagaagtgattgaagaacaaggcctg
tttacctatctaggcactcgccaagacacggaagagagcggtgtttctctgcgtgagatc
ttcctaagtaaccagatccgttttaacaaacctcaagataagctctatgctggtcaaatt
gatcgcatggacaactttgtgttgcgctaccgtgcattgagcaaccaatatcagcaacat
aagagccctatgcgtggcctgtgtggcatgcgtgcaggtcttatccctcatcagctatac
atcgctcatgaagtcggtcgtcgtcacgcaccgcgcgttctgctcgcggatgaagtgggt
ctaggtaaaaccatcgaagcgggtatgatcatccatcagcaggtgctttctggccgtgct
gagcgtatcctgattgtggtaccagaaacactgcagcatcaatggttggtcgaaatgatg
cgtcgtttcaacctgcatttctctatcttcgatgaagagcgctgtattgaagccttcgct
gaatcggacaatccgttcgatactcagcaatatgtattgtgttcactcgacttcctgcgt
aagagccgcaaacgctacgagcaagcactagaaggtgagtgggatctattggttgtcgat
gaagcgcaccacctagagtggagccaagacaaaccaagccgccaataccaagtggtggaa
ggattagctgagaatactccgggtgtgctgctactgacggcgacacctgaacaactgggc
cgtgagagccactttgctcgtctacgcctgctggatcctgaccgcttttatgattacgac
gcatttgttgaagaagaagagcaatacgcgccggttgcagatgcagtaacggcactgttc
tctggtatcaagctagagaatagccagaaaaaccagattactgagctgctttcggaacag
gacgttgaacctcttttccgtgttatcgaaggcgatagcccagaagaagagcaggcgatt
gcgcgccaagagctgattgataacctaatggatcgtcacggtactggccgcgttctattt
agaaacactcgtgctgcgattaaaggtttccctaagcgtaacgttcatctactgccaatg
gagatcccaagtcagtacaccacatcgatgcgtgtatcgggcatgattggtggcaagatg
acaccagaagcgcgagcgatgaagatgctctacccagaagagatcttccaagagtttgaa
ggtgaagaatcaagctggtggcagttcgattcacgcgtaaactggttgctagagaagatc
caagagaagcgcagcgagaagatcctggtgatcgcatctcgtgcgagcacagctctgcaa
cttgagcaggcattgcgtgagcgtgaaggtattcgtgcaacggtattccacgaagggatg
tctatcctagagcgtgacaaagcggcggcatactttgctcaagaagagggcggtgctcag
gttctgatctgtagtgagatcggctctgaaggtcgtaacttccagtttgcaaaccaattg
gtgatgtttgacttaccatttaacccagacttgcttgagcagcgtattggtcgtcttgat
cgtatcggtcagcagcgtgatatcgacatccacgttccatacctgaaaggtacctcacaa
gcaattcttgcacgttggtttgatgaaggcttgaatgcgtttggtgagacatgtccaaca
ggtcgcaccgtttacgacaagtacgcagaaaatctgattgagatgctggcatcgggcaac
actgaacagttagatgaagtgattgaagagtcggcgaagcttaaccagagccttaaagct
gatcttgagaaaggtcgcgaccgactgcttgagatgcattcaaacggtggtgagaaagcg
gctgaaatcgctgagaaaattgcttctactgatggcgacaccaacttggtgacgtttgca
cttagcctattcgacaccatcggtcttaaccaagatgacaagggtgaaaacgcactggta
gtcacaccgtctgagcacatgatggttccaagctacccaggtctgccatacgaaggtgca
acgatcaccttcgaccgtgatacggcgctgtctcgtgaagatatgaacttcatcagctgg
gagcacccgatgattcaaggtggtattgatctgctattgagtgaaggcgtgggtacttca
gctgtgtcactgttgaagaacaaagccctacctgtcggtaccattcttctagagttggtt
taccttgttgatgcgcaggcgcctaagcgcagcggtatcagccagttcttacctaagaca
ccgattcgtctgatgatggatgggcgtggtaacgatctctcttcacaggtggaatttgaa
ggctttaaccgtcaattgagccctgtgaaccgccatttagcaagtaagctagtgaactcg
gtgcaagcggatatccataagttgattgaagccggtgaagcgcaagtgctgcctaaagtg
gaagaagttcgagagcaagctcagaaagagatgcaagcgaaccttaatggcgagctagag
cgtctacaagcactgaaagcggtgaatccaaacattcgtgacgaagagttacaagtgatt
gagacacaaattgaagagctgacgggctacattgctaaagcgcaagtacagcttgattcg
ctgcgtttgattgtggtttcgcacaactaa
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