Vibrio pelagius: LZI70_07870
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Entry
LZI70_07870 CDS
T08558
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vpg
Vibrio pelagius
Pathway
vpg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LZI70_07870 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpg03021
]
LZI70_07870 (rpoB)
03400 DNA repair and recombination proteins [BR:
vpg03400
]
LZI70_07870 (rpoB)
Enzymes [BR:
vpg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LZI70_07870 (rpoB)
Transcription machinery [BR:
vpg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LZI70_07870 (rpoB)
DNA repair and recombination proteins [BR:
vpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LZI70_07870 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
DUF7073
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
UTT83632
LinkDB
All DBs
Position
1:1784913..1788941
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALGKSTEEILDLFFEKVNFEVKDQTLLME
LVPDRLRGETASFDIEANGKVYVETGRRVTARHIRQLEKDGVEHIEVPVEYIVGKVASKD
YINEATGEIIVGANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSDTLRADSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIEREEEEERGTL
DESDIIEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDYGFLETPYRRVVDGVVT
DEVDYLSAIQEGQFVIAQANTVLTEEGTFADELITARQKGESGLHPRDHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNIAVDSGVTAVAKR
GGMIQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLLSGGYSEAKLDAIGRKKWLEQTLEDDALQSQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELHK
FREFLQKVYDLGDTRQKVDIAELSDDQVRTLIKNLRGGLPIATPVFDGASETLIKELLKL
GDLPESGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gttttggacattccatacctgttatcgatccagcttgattctttcgacaaattcatcgaa
caggatcctgaaggtcaatacggtcttgaggctgcttttcgttctgtatttccaattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgtaacttactcaaagccactacgcgttaaacta
cgtctagttatctttgataaagatgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgcttatgacagacaatggtactttcgtaatcaatggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagtgat
aagggtaaaacccactcatcaggtaaagttctttataacgcacgtgtaattccttaccgt
ggctcatggttagactttgagttcgatcctaaggataacttattcgtacgtatcgaccgt
cgtcgtaagttaccagcttcaatcatccttcgtgcactaggtaagtcgacagaagagatc
ttggatctattcttcgagaaagtgaacttcgaagtgaaagaccaaactctacttatggag
cttgttcctgatcgtctacgtggtgaaactgcgtcattcgacatcgaagcaaacggcaaa
gtttacgttgagactggtcgtcgtgttactgctcgtcacatccgtcaacttgagaaagat
ggcgttgaacacatcgaagtaccagtagagtacatcgttggtaaagttgcatcgaaagat
tacatcaacgaagcaactggcgagatcattgttggtgcaaaccaagagatcagcctagag
gcacttgctaacctatctcaagcaggtcacaaagctctagaagtactgttcacgaatgac
ctagaccacggtccattcatgtcagacactctacgtgcagacagcacggtagatcgcatc
tctgcgcttgtagaaatctaccgcatgatgcgccctggcgagccaccaacaaaagaagct
gcagaagctctattcgaaagcctattcttctctgaagagcgctacgacctatcaacagta
ggccgtatgaagttcaacagctctatcgagcgtgaagaagaagaagagcgcggtacgcta
gacgaatcagacatcatcgaagtgatgaagaagctgatcgctatccgtaacggtaaaggt
gaagttgatgatatcgaccacctaggtaaccgtcgtatccgttcagtaggtgaaatggca
gagaaccaattccgtgttggtctagttcgtgtagaacgtgctgttaaagagcgcctaagc
cttggtgatcttgatgcgatcatgcctcaagacctaatcaacgctaagcctatttctgct
gctgttaaagaattctttggctcttcacagctttcacagttcatggaccaaaacaaccca
ttgtcagaagtaacgcacaagcgtcgtatttctgctttaggtccaggtggtcttactcgt
gagcgcgcaggcttcgaagtacgtgacgttcacgtaactcactacggtcgtctatgtccg
atcgaaacgcctgaaggtccaaacatcggtctaattaactcgctatctgcatttgcgcgt
tgtaacgactacggtttcctagaaactccgtaccgtcgcgtagtagatggtgttgtaaca
gacgaagtagattacctatctgcaatccaggaaggtcaatttgtaatcgcgcaggcgaac
accgttcttactgaagaaggtacgttcgcagatgagctaatcactgctcgtcagaaaggt
gaatctggtcttcacccacgcgaccacgttgactacatggacgttgcgacaaaccaagta
gtatctatcgctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaagcagttccgactctaaaagctgataagcctctagtt
ggtacaggtatcgaacgtaacatcgcagtagactctggtgtaacagccgtagctaaacgt
ggtggtatgattcagtctgtagacgcttctcgtatcgtagttaaggttaacgaagatgag
ctagtacctggcgaagctggtatcgacatctacaacctaactaagtacacgcgttctaac
caaaacacatgtattaaccaacgtcctaccgtactacctggcgagccagtagcacgcggt
gacgtactggctgacggtccttcaacagaccttggtgagctagcacttggtcaaaacatg
cgtatcgcattcatgccttggaacggctacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacgactatccacatccaagaactatcttgtgtggct
cgtgatactaagctgggctctgaagagatcacagcggatattccaaacgtaggtgagtct
gctctgtctaaactagacgagtcaggtattgtttacattggtgctgaagttaagggtggc
gacatcctagttggtaaagtaacacctaaaggtgaaactcaactgactcctgaagagaag
ctactacgtgcaatcttcggtgagaaagcatctgatgttaaagatacttctctacgtgta
ccaaactctgtttcaggtacgatcatcgatgtacaagtctttactcgcgatggcgtagag
aaagacaagcgtgcacttgaaatcgaacagatgcagcttaaagaagcgaagaaagaccta
actgaagagttccaaattcttgagggtggccttcttaaccgtgttaaagctgttcttctg
tctggtggttactctgaagctaagcttgatgcaatcggccgtaagaagtggctagagcaa
acactagaagacgacgcgctacaatcacagcttgagcagcttgctgagcagtgggatgag
ctaaaagctgacttcgataagaagtttgaaactaagcgtcgtaagatcactcaaggtgat
gatctagcgcctggcgtactgaagattgttaaggtttacctagcagttaaacgtcgcatc
cagcctggtgataagatggcgggtcgtcacggtaacaaaggtgtaatctctaagattaac
cctgttgaagacatgccatacgatgagaaaggtcaacctgtcgacatcgtactaaaccca
ctgggtgtaccatcgcgtatgaacatcggtcagatcctagaagtacacttaggtctggct
gcgaaaggtatcggtgacaagatcaaccaaatggttaaggaacaacaagaactgcataag
ttccgtgagttcctacagaaggtttacgatcttggtgatactcgtcagaaagttgacatt
gctgaactgtctgatgatcaagttcgtactctgatcaagaacctacgtggcggtctaccg
attgctactcctgtgttcgatggtgcttctgaaacgttaatcaaagaactacttaaactg
ggtgacctaccagaatctggtcagctaactctgtttgatggtcgtactggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactaaaccaccttgttgatgac
aagatgcacgctcgttcaactggttcttacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgcttcaagaaatgctaacagttaagtcggatgacgttaacggccgt
actaagatgtataagaacatcgtagatggcaaccatagcatggaacctggcatgccagaa
tcgttcaacgtactgttgaaagagatccgctcgctaggtattaacatcgagctagaagac
gaagagtaa
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integrated database retrieval system
