Vibrio pelagius: LZI70_09360
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Entry
LZI70_09360 CDS
T08558
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vpg
Vibrio pelagius
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpg03009
]
LZI70_09360 (rlmD)
Enzymes [BR:
vpg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LZI70_09360 (rlmD)
Ribosome biogenesis [BR:
vpg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LZI70_09360 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_11
MTS
PCMT
Cons_hypoth95
Methyltransf_15
RrnaAD
Methyltr_RsmB-F
Methyltransf_23
Ribosomal_L22
PabTrmU54_TRAM_dom
Methyltransf_4
Wtap
DREV
Motif
Other DBs
NCBI-ProteinID:
UTT83902
UniProt:
A0ABY5G1A1
LinkDB
All DBs
Position
1:2071956..2073281
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AA seq
441 aa
AA seq
DB search
MARFFQPKKKTQFETKHQSVLVERMDHNGAGIAYQKNKPVFIDGALPGEQVVIQLTESKS
KFARAKLIKLLKPSEQRLKPFCKHFNQCGGCHLQHMDYISQVEHKGLSLSHLMSQYQTPS
TEIADPITGPQVGYRRRARVSLFMDRKNQQLQFGFRKKQSKHIENVTDCAVLEPSLNALL
PKMKALLETFSQPMNLGHVELVLSDKGPVIVLRHLKPLADKDQQALIDLATEQGAILYSM
PETDQLVRLVGDAPTYSETGVTLPFEPNHFIQVNQQVNQKMVAQAIEWLNPQADERVLDL
FCGLGNFSLPIAKQSALVVGVEGVDEMVKQATSNAEVNQLDNATFYQANLEEELSSQPWA
KEKFDKVLLDPARAGASGIVDQLSALGAKSVVYVSCNPATLARDTASLQNQGYQMVKMGM
LDMFPHTSHLESMALFVKEKS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtttttttcaaccaaaaaagaaaactcaattcgagaccaagcatcaatcggtt
ttggttgaacgaatggatcacaatggcgcaggcatcgcttatcagaaaaataaaccagtg
tttattgatggtgcgttgccgggcgagcaagtggtgattcaattaacggaaagcaaaagt
aagtttgcgcgtgcgaaactgattaaactattaaagccaagcgaacagcgactaaagcct
ttctgcaaacactttaatcagtgtggtggttgtcatctacaacatatggattacatatcg
caagttgagcataaggggctgtcactgagccacttaatgagtcaataccaaactcccagc
actgaaattgccgatccaattactggtccgcaggttggctatcgtcgtcgtgctcgcgtg
agcttgtttatggacagaaagaatcaacagctgcagtttggctttcgcaagaaacagagc
aagcacatcgagaatgtgacggactgcgcagtgttggagccaagcttaaatgcgttgctg
ccaaagatgaaagcgctactggagacttttagccaaccgatgaaccttggtcacgtagaa
ctggttctttctgataaagggccagtgattgtccttcgtcaccttaaaccgttggcagac
aaagatcagcaagcgcttatcgatttagcgacggagcagggggcaatcttgtattcaatg
ccagaaacggatcaactggttcgtttggttggtgatgcgccgacatacagtgaaacaggc
gttactctgccgtttgagccgaatcactttattcaagttaatcaacaagtgaaccaaaaa
atggtggcacaagcaattgagtggttgaatccacaagcggatgagcgagttctcgacctg
ttttgtggcttaggtaatttcagtttacctatcgcaaaacagtccgcattggtggttggc
gttgaaggtgtggatgaaatggtgaaacaggcaacgagcaatgctgaagtaaaccagctc
gacaacgcgactttctaccaagcgaacctcgaagaagagctctcttctcagccgtgggca
aaagagaagttcgacaaggtgcttcttgatcctgcacgcgctggggcaagtgggattgtc
gaccaactttcagcgctgggcgcgaagagcgtggtttatgtttcatgtaatcctgctact
ctagctagagatacggcaagcttgcaaaatcaaggttatcaaatggtcaaaatgggtatg
ttagacatgtttccgcataccagtcacttggaatctatggcactattcgttaaagagaaa
tcatag
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