Vibrio pelagius: LZI70_11205
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Entry
LZI70_11205 CDS
T08558
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vpg
Vibrio pelagius
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpg03016
]
LZI70_11205 (rnd)
Enzymes [BR:
vpg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LZI70_11205 (rnd)
Transfer RNA biogenesis [BR:
vpg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LZI70_11205 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
UTT84240
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All DBs
Position
1:2472159..2473277
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AA seq
372 aa
AA seq
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MNYQIITQLKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIAL
DEMTPFVSLLKDASVMKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA
LVSEFVGIDLDKSESRTDWLARPLSQKQLDYAAADVYYLLPMYNKLLEKVMQAGWWDAAQ
QESELQVSKRIRSIEPENAYLDIKGAWQLKPKQLAILKPLATWRLKEAIKRDLALNFIFK
EQDLWAVARFAIKNPKRMEEEGFDFRSVRRHGAKISSIVKLAEHTPEEEYPAVVERLMDF
PGYKQMFKVLKDEVKKASQHSGLATEFIASKKQLNQVLSWVWKHDRNPEKLPDVMQGWRL
DVVGEKLNKAIK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtgaactatcaaatcattacccaattgaaagaccttgaacgtgtatgtcagcaagcccgt
gaagccgatgttgtgatgcttgacaccgagtttgtccgcaccagaacttactacccgcag
ttaggtttgattcaattatttgatggtgaaactctgtctttgattgacccaatcgccttg
gatgagatgactccgtttgtatcattactgaaagatgcttcggtaatgaaggtgttacat
gcttgtggtgaagatctagaagtgttccaaaatgcgtttggttgtacgccaacaccaatg
gtggatacgcaaatcatggctgctttcttggggcacggtttatcgacggggtttgcagcc
ctggtgtccgaatttgttggcattgaccttgataagagcgaatcacgcaccgattggtta
gcgcgcccgctatctcaaaagcagcttgattatgcagcagcggatgtttactacttgttg
ccaatgtacaacaagttgctagaaaaagtgatgcaagctggctggtgggacgctgcgcag
caagagtctgagctgcaagttagtaagcgtattcgttcaattgaaccagagaacgcttac
cttgacatcaaaggggcttggcagttaaaacctaagcaactggctattttgaaacctttg
gcaacttggcgactcaaagaggcgattaagcgcgacctagcgttaaatttcattttcaaa
gagcaagatctttgggcggtagcacgttttgctattaagaatccaaagcgcatggaagag
gaaggttttgatttccgctcggtgcgtcgccacggcgcgaaaattagctctatcgtaaag
ctggcagaacacacaccagaagaagagtatccagcggttgtcgaacgtttgatggacttc
cctggttacaagcagatgtttaaagtcctcaaagatgaagtgaagaaagcatctcaacac
agtggtttggcgactgagtttatcgcgtctaaaaaacagcttaatcaagtcttaagctgg
gtttggaagcacgatcgcaacccagaaaaattgccagatgtgatgcaaggctggcgctta
gatgtggttggtgagaagttgaacaaagctattaaatag
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