Vibrio pelagius: LZI70_12105
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Entry
LZI70_12105 CDS
T08558
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vpg
Vibrio pelagius
Pathway
vpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZI70_12105 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpg03019
]
LZI70_12105 (rne)
03009 Ribosome biogenesis [BR:
vpg03009
]
LZI70_12105 (rne)
Enzymes [BR:
vpg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LZI70_12105 (rne)
Messenger RNA biogenesis [BR:
vpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LZI70_12105 (rne)
Ribosome biogenesis [BR:
vpg03009
]
Prokaryotic type
rRNA processing factors
LZI70_12105 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UTT84413
UniProt:
A0ABY5G2P5
LinkDB
All DBs
Position
1:complement(2655948..2659061)
Genome browser
AA seq
1037 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLKEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWAAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
QAHIQLVRPDFISRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVES
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPKKLDALKEAESKEPAEQTIRPKKIEEPALKGFAAPAQSA
PAPAPKAAAAKVEEKKEEPKAQESGLISRFFKAIGSFLFGGSSSQEEKQEEKQEEKPKNN
RNNGNRQRRDRNDNRRRNQRGDRNENRDNKRRRKPARDEKPEEQKENATQQPRQNRKPKQ
DRRNKQRDEQKQQREEQVPSKVAEQGQQLAADAQASKPEGQKPKSEAKAAKVKERRQRRK
LNKQIRVKDQQAQAENNSAKEQVAAKDKSVAQEQKVAEQVEANQANAEQTEQEEPKQRRN
RRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRFVPKPHHKQAKPEAA
KAEAQQSTELEAVQNNVVIAGGFACPEMAMGKVIIRREEPLIEAVVEVKAEEVVAQPAVE
APVVEKSVAQKAVAEAPVAAPVAEEAPVADTPAIEESVEVEETVEAKTEETVTEAPVVEA
PIAAAKPVEAAPVTEEKPSVEAKKQASSPMTKAPGPQEIKEIEVVAAPFRSERYVSKGAG
SQVASNQAGSGMTKPNY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgat
ggccagcgacttttcgatcttgatatcgaaagtccaggtcacgaatcaaaaaaagcgaat
atctacaaaggacgtatcactcgtattgaaccaagcctagaagcggcatttgttgactac
ggcgcagaacgtcacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttacacataccaaggtcgtccaagcatcaaagaagtgctaaaggaaggccaggaagtt
atcgtacaagttgagaaagaagaacgtggtagcaaaggtgctgcactgactactttcatc
tctttggcgggtagctacttagttcttatgccaaacaaccctcgtgcaggcggtatctct
cgccgtatcgaaggtgacgagcgtactcaactaaaagccgctttaagcacgcttgagctt
cctcaaggcatgggtttaatcgttcgtactgctggcgttggcaaaagcgcagaagagctt
gagtgggacttaaacgtactacttaatcactgggctgctatcaagcaggcttcggattca
aacgcagcacctttccttatccaccaagaaagtaacgtaattgttcgtgcaattcgcgac
tacttgcgtcgtgatattggtgaaattcttatcgacagcaacactatttttgagcgtgca
caagcgcacattcaactggtgcgcccagactttatcagtcgcgttaagaagtacgacggt
gaagttcctctatttagccactaccagatcgagagccaaattgaatctgctttccaacgt
gaagttcgtcttccgtcgggtggttcaatcgttatcgacccaacagaagcgctaacttct
atcgatatcaactctgctcgtgcaacgaaaggcggtgatattgaagagacagctctgaac
accaacctagaagctgcagatgaaattgctcgtcaacttcgtctacgtgacctaggtggt
ctagtcgttatcgacttcatcgatatgacgcctgttcgtcatcaacgcgaagtagagagc
cgtctacgtgatgcagttcgtctagatcgtgcacgtgttcaaatcggtcgtatttctcga
ttcggtcttcttgagatgtctcgtcagcgtctaagcccttctctagcagaagcaagccac
cacatctgtcctcgctgtacaggtactggtgttgtacgtgataacgaatctctagcactt
tctgttcttcgtctaatcgaagaagaagcgctaaaagacaacacagcacaagtgcttgcc
gttgtaccagtgccaatcgcttcttacctactgaacgagaagcgtcgctctgtaaaccac
attgagcgtactcaagaagttaagatcactgttgttcctaactctgacatggaaactccg
cacttcgaagttatccgtgttcgtgaaggtgaagagttcgatctactttcttacctactt
cctaagaagctagacgctctgaaagaagcagaaagcaaagaaccagcagaacagacgatt
cgtcctaagaagattgaagagcctgcactgaaaggttttgctgctccagctcaatctgca
ccagctccagcgccaaaagcggcagctgcaaaagtagaagagaagaaagaagagcctaaa
gcacaagaatcaggcctaatcagccgcttcttcaaagctattggcagcttcctattcggt
ggatcttcatctcaagaagagaaacaggaagagaagcaagaagagaaacctaagaacaat
cgcaacaatggcaaccgtcaacgtcgcgatcgcaatgacaatcgtcgtcgcaaccagcgt
ggtgaccgtaacgaaaaccgcgacaacaagcgccgtcgtaagccagctcgtgatgagaag
cctgaagagcaaaaagaaaatgccactcagcagcctcgtcaaaaccgtaagccgaagcaa
gatcgccgtaataagcagcgtgacgagcagaagcaacaacgcgaagagcaagtaccatct
aaggttgcagaacaaggtcaacagctagcagctgatgctcaagcttctaaaccagaaggt
caaaagccgaagtctgaagcgaaagctgcgaaagttaaagagcgtcgtcaacgtcgtaaa
ctgaacaagcagatccgcgttaaagaccagcaagctcaagcagaaaacaactcagcgaaa
gagcaagttgcggctaaagataagtctgttgctcaagagcaaaaggtagcggaacaagta
gaagctaaccaagcgaatgctgaacaaacagaacaggaagagccgaagcaacgtcgtaac
cgtcgttctccacgtcacctacgtgcaagtggtcaacgtcgtcgtcgcggtcgtgatcgt
cgccctaacccattccgtctacgtaaaggtggtgtagcctctccagagatggcgatgggt
aaagtgatgcctcgtttcgtgcctaagccgcaccacaaacaagctaagcctgaagctgcg
aaagctgaagcgcaacaatcaactgaactagaagctgttcaaaacaatgttgtgattgct
ggtggttttgcatgccctgaaatggcaatgggtaaagtgattatccgccgtgaagagcct
ttgattgaagctgttgtagaagtgaaagctgaagaagtggtagcacagcctgcggttgaa
gcacctgttgttgagaaatctgtagctcagaaagctgtagctgaagcgcctgtagcagca
cccgttgctgaagaagcaccagtcgcagacacgcctgcaattgaggaatcagttgaagtt
gaagaaacggttgaagcaaaaactgaagagactgtcactgaagctccagttgttgaagct
ccaattgctgcggctaagccagttgaagctgcacctgtgactgaagagaaaccttcagta
gaagcgaagaaacaagctagctcgccaatgacgaaagctccaggtcctcaagagatcaaa
gagattgaagttgtggcagcaccattccgtagcgaacgttacgtatcgaaaggtgcaggc
agtcaagttgcttcgaaccaagcaggttctggtatgacgaaaccaaactactaa
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