Vibrio pelagius: LZI70_17985
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Entry
LZI70_17985 CDS
T08558
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpg
Vibrio pelagius
Pathway
vpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZI70_17985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpg03019
]
LZI70_17985
03009 Ribosome biogenesis [BR:
vpg03009
]
LZI70_17985
Enzymes [BR:
vpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZI70_17985
Messenger RNA biogenesis [BR:
vpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZI70_17985
Ribosome biogenesis [BR:
vpg03009
]
Prokaryotic type
rRNA helicases
LZI70_17985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UTT86247
LinkDB
All DBs
Position
2:complement(973755..975698)
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AA seq
647 aa
AA seq
DB search
MSESVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGKDALGKAQTGTGKTAAF
SLPLLNKINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMR
ALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPES
AQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKEGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAEARLAKLGAELEAEKEHKSLENFAELVAKLQENLEIDPTT
LAAMLLKRQQGKRPLFYIGEDPMIAAIERDKNRRKERRENRDRDGGRGGRDFNSQDWDTY
QLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQAATYVQLPKAMNSETAGKLNKLR
IRQKEAGAVVVDFNDFREPRRGNGGRGGRDGGRGGYRGNRDGNRDGNREGGRGGYRGNRD
GNREGGRDGERRFDRNRGGDHRGNYRGERGHGNGNGGRGRRNDRGEG
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatctgtaattcaatttaatgaattagcacttaacgaaaacatcctttcagct
cttgatagcatgggtttcgtatctccaactccaatccaagcggcagcaattcctcttctt
cttgaaggtaaagacgcactaggtaaagcacagacaggtactggtaaaacagcagcattc
tctctgcctctactgaacaaaatcaacctaaaccaacataaaccacaagcaatcatcatg
gctcctactcgtgagctagcgattcaagttgctgcggaaatcaaaaaccttggtcgtgac
attaaaggccttaaggttattgaaatctacggtggtgcttcaatcgttgaccaaatgcgt
gctctaagccgcggtgctcacattgttgttggtactccgggtcgtgttaaagacttacta
actcgtgaccgtctacacctagatgaagcacacacatttgtgcttgatgaagcagatgaa
atgctaaaaatgggcttcgtagatgacgttacttggatccttgaacaagctccagaatct
gcacaacgtgtactattctctgcaactatgcctccaatggttaagactatcgttgatcgt
tacctacgtaacccagcgaaagttgacgttgctggtactaaccacacagttgataaagta
gcgcagaacttctgggttgtgaaaggtgtagagaaagacgaagcgatgtctcgtcttctt
gaaactgaagagactgacgcgtcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggcttcaaagctgctgcactacacggtgacattcct
cagtcgctacgtgagcgtactgttgatcacatcaaagaaggtgttatcgatatcctagtc
gcaactgacgttgttgcacgtggtctagacgttccacgtattactcacgtattcaactac
gacatcccattcgatgttgaatcttacatccaccgtattggtcgtactggccgtgctgga
cgtaaaggtaaagcgatccttctagttcgcactaaccaaatccgtatgcttcgcactatt
gagcgcgtaactaagtcatcaatggaagaaatccaacttcctctacgtgacaaagtcgct
gaagctcgtctagctaagctaggtgcagaacttgaagctgagaaagagcataagtctcta
gaaaacttcgctgagctagttgctaagctacaagaaaacctagagatcgacccaacgact
cttgctgcaatgcttcttaagcgtcaacaaggtaagcgcccactgttctacattggcgaa
gacccaatgatcgctgcaatcgagcgcgataagaaccgtcgcaaagagcgtcgtgaaaac
cgcgatcgtgacggtggccgtggtggtcgtgacttcaacagccaagattgggatacatac
caactgcaagttggtcgcgagcaaggcgttcaagttaaagacatcgttggcgcactagca
aacgaactaggcctaactaaaggttctatcggtgctatcaaactagaccaagcagcaact
tacgttcaacttccaaaagcgatgaactctgaaactgctggtaagctaaacaaactacgc
atccgtcaaaaagaagcgggcgcagtggttgtagacttcaacgatttccgtgagccacgt
cgtggtaacggcggccgtggtggtcgtgatggcggtcgcggtggttaccgtggcaaccgt
gacggcaatcgcgatggtaaccgcgaaggcggacgtggcggctaccgtggtaaccgtgac
ggcaaccgcgaaggcggccgtgatggcgagcgtcgtttcgaccgtaaccgtggtggcgat
caccgtggtaactaccgtggcgaacgtggccatggtaacggcaatggcggccgtggtcgt
cgcaatgaccgtggcgaaggttaa
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