Vibrio parahaemolyticus UCM-V493: VPUCM_0502
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Entry
VPUCM_0502 CDS
T03116
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03410
Base excision repair
vph03430
Mismatch repair
vph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VPUCM_0502
03430 Mismatch repair
VPUCM_0502
03440 Homologous recombination
VPUCM_0502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_0502
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VPUCM_0502
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VPUCM_0502
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VPUCM_0502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AHI98460
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All DBs
Position
1:541417..543156
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AA seq
579 aa
AA seq
DB search
MIEIQRRPEPDLSLLPDSIPPILKRIYINRGITDIAQLETSARGLHSYQKLGGIEQAVEL
LFQAIQEQKRIIVVGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVD
QALELGAEMIMTVDNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPEVDAMVNPNLDSCA
FPSKALAGVGVAFYLMMALCVHMRKHNWFAQQGMQEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFG
VELLMCNNMHAARRMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLSLFQ
RDWHQGVIGILASRIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGL
IIKFGGHAMAAGLTIKEQDFERFSRLFDEVVKKELDEAALKGVILTDGELKPEEFSMHIA
EQLRAGGPFGQAFPEPIFDGEFKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVD
LRRWPDASVKTVRLAYKLDVNEFRGNQSLQLMIDHIEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattcaacgacgtcccgaaccggatctttcccttctcccagattccattcct
ccgatcttaaaacgcatttacatcaatcgcggtattactgacatcgcgcagctagaaacc
tctgctcgtggattgcattcgtaccaaaagcttggcggcattgagcaggcggttgagttg
ttgttccaagcgattcaagagcaaaaacgcatcatcgtggtgggtgactttgacgcagat
ggcgcaacgagttctgctctttctgtattggcattgcgtatgcttggcagcaataacgtc
gattacttggtgccgaaccgctttgaagatggctacggtttgagcccagaggtggtcgat
caagcattggaacttggcgcagaaatgatcatgacggtcgacaatggcgtatcgtcgatt
gaaggtgtgcgctacgccaaagaaaatggcattaccgtattggtgacagaccaccatttg
ccaggacaagttctgccagaagtggatgcgatggtgaacccaaacctcgacagttgtgcg
tttccttctaaagcgttggctggcgttggtgtggcgttctatctgatgatggcgttgtgc
gttcacatgcgcaaacacaactggtttgctcagcaaggcatgcaagagccgaaactgatg
gagctgatcgaccttgtcgcactgggcactgttgctgatgttgtgccgcttgatgagaac
aaccgaattctggtgcatcaagggttgcagcgcattcgtgcggggaaagcgcgcccaggt
attcaggcactgattgaagtggcgaaacgcgatgcgcgacgtttggtggcatcggacttc
ggctttgcattggggccgcgtattaatgccgctggccgtttagacgacatgtcttttggt
gttgagctactgatgtgtaacaacatgcacgccgcacgtcgcatggccagtgagcttgat
gggctcaatcagactcgtaaagagattgaagaaggcatgaagcaagaagcgatggcgttt
tgtgaacgtttgcagtttggcgaaaacagcgagctgccatacggcttatcgctgttccaa
cgcgattggcaccaaggtgtgattggtattctcgcttcgcgtatcaaagagaaattccat
cgcccagtcattgcctttgctgacggtggtgaagggacgatcaagggttcttgtcgttcg
attcctggattacacatgcgtgatgcgttggacttcatcgatacgcaaaatccaggtttg
atcatcaagtttggcggtcacgcgatggcggcaggcttaaccatcaaagagcaagatttt
gagcgtttcagtcgtttattcgatgaagtggtgaaaaaagagctcgacgaagcggctcta
aaaggcgtgattcttactgatggcgagttaaaaccggaagagttttctatgcacattgcg
gagcagttgcgcgctggtgggccattcggacaagcttttcctgagccaatctttgatggt
gagtttaaggtgttgcaccaaaaattggtgggagaaaaacatcttaaactgatgttggag
cctttatacaaagggcatccgaccaatgtgatgattgatggaattgcatttaacgtcgat
ttacgccgttggcctgacgcatcggtcaaaactgtacgtttggcctacaagctggatgtg
aatgaatttcgtggcaaccaatcattgcaactgatgattgatcacatcgaagccaagtaa
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