Vibrio parahaemolyticus UCM-V493: VPUCM_0505
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Entry
VPUCM_0505 CDS
T03116
Name
(GenBank) Transcriptional regulator VpsR
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VPUCM_0505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vph03000
]
VPUCM_0505
Transcription factors [BR:
vph03000
]
Prokaryotic type
Helix-turn-helix
Other families
VPUCM_0505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
AAA_16
AAA_5
HTH_29
HTH_22
HTH_50
HTH_7
HTH_17
AAA
HTH_Tnp_1_2
TIP49
HTH_IclR
HTH_30
TrmB
DUF134
HTH_23
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
AHI98463
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Position
1:546272..547564
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AA seq
430 aa
AA seq
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MVVGGTYEPWLSVLEQVGWKCHQVGDLRKANTLLEDIGPCIGIVDLSHDEFSLNGLANLV
SSHKHVRWLAFIRESQLGTDTICQFIVNFCIDFFTAPIPDAQLLSTIGHQLGMLKLEKKV
WPSFGNSLDMGLIGESIPMKRLRDQVKRIGPTDVSILISGESGTGKEAVARAIHKVSSRS
HKPFMSINCRALNEQRFQAEVFGIAADAEMGPSLLEQADGGTVLFNDILTISKDQQMNLL
RFLQEGTIETRDGVKNVNVRILAANSSDVEKALIDGDFNEELYHYINVLRINVPSLKERA
SDIALLARFYLQEFSKEYNSQAKSFSEDALKALTRYFWPGNVRELMNQVKRAVLMSDSVM
IEEHHLDLPQRNDSKRSLKSIREKSERDALLVVLESHSGQVSNAAKELGVSRATMYRLLN
KHNLISDQAM
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
gtggtagttggcggtacttatgagccttggttatcagtactggaacaagttggctggaag
tgtcaccaagtaggcgacttacgcaaagctaacacgttattggaagatattgggccttgt
atcggtatcgttgacctgagccatgacgagtttagcttgaatggtctggcaaacttagtg
agttctcataagcacgtgcgttggttggcgtttattcgtgagtctcagctcggcacagac
accatctgccagttcatcgttaacttctgtatcgacttttttactgccccaatcccagat
gcccaactgttgagtaccatcggccaccaacttggtatgctcaagctagagaaaaaagtt
tggccaagttttggtaatagcctcgatatggggctgattggcgaatctatcccgatgaag
cgcttacgcgatcaagttaagcgaattggtcctacggacgtgagtattctgatctctggt
gagagtggtactggtaaagaagcggttgctcgtgcaattcacaaagtatcttcccgttct
cataagccctttatgtcgattaactgccgcgctttgaatgagcaacgtttccaagcggaa
gtctttggtattgctgcggatgctgagatgggcccaagtctgttggaacaagcagatggc
ggtactgtgttgtttaatgacattctgaccatttcgaaggatcagcaaatgaacctgtta
aggttcttgcaagagggcacgattgaaacgcgcgatggtgtgaagaatgtgaatgtgcgt
attcttgctgctaactcgtcagacgtagaaaaagctttgattgatggcgacttcaacgaa
gagttgtaccattacatcaatgtacttcgtatcaacgtaccaagcttgaaagagcgcgcg
agtgacattgcactgttagctcgcttctatctgcaagaattctctaaagagtacaactct
caagcaaaaagtttctcagaggacgctttgaaagctctgactcgttacttctggcctggt
aatgttcgcgagttgatgaaccaagttaagcgtgcggtgttgatgtctgacagcgtgatg
attgaagaacatcatctcgatttgccgcaacgtaatgattcaaaacgcagtttgaaatca
attcgagaaaagagtgagcgtgatgcgttattggtcgtgttggaatcgcactctggtcaa
gtttccaatgcggcgaaagaacttggtgtgtcgcgtgcaaccatgtatcgactactgaat
aagcacaacttgatttccgatcaagcgatgtaa
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