KEGG   Vibrio parahaemolyticus UCM-V493: VPUCM_0720
Entry
VPUCM_0720        CDS       T03116                                 
Name
(GenBank) DNA polymerase III, epsilon subunit-like protein
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
vph  Vibrio parahaemolyticus UCM-V493
Pathway
vph03030  DNA replication
vph03430  Mismatch repair
vph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VPUCM_0720
   03430 Mismatch repair
    VPUCM_0720
   03440 Homologous recombination
    VPUCM_0720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vph03032]
    VPUCM_0720
   03400 DNA repair and recombination proteins [BR:vph03400]
    VPUCM_0720
Enzymes [BR:vph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VPUCM_0720
DNA replication proteins [BR:vph03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     VPUCM_0720
DNA repair and recombination proteins [BR:vph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     VPUCM_0720
SSDB
Motif
Pfam: RNase_T Adeno_E4_34
Other DBs
NCBI-ProteinID: AHI98678
LinkDB
Position
1:784111..785016
AA seq 301 aa
MTRAPAPFPLERLADIPDRPEDFRLLERIPLTREPQTWPLELSPMVGDEQPMVLLDTETT
GLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELITELTGITDDMVRG
QHIDDSLVASWLSDDPLVVAHNAQFDRPFFENRFAALGHLSWACSASGIDWKALGFESRK
LEYLLLRLGWFYEGHRAATDCLAMAWLFHLLPESVANLLSEADRRTVLVRAFGAPFDVKD
YLKERGYRWHDGVKGANKHWWREISEDELPQEQTYLDDLYHRGSEHAHYDYKDARNRFKA
L
NT seq 906 nt   +upstreamnt  +downstreamnt
atgacaagagcccctgcgccatttccgctagagcgcctcgcggatatcccagacagacca
gaagattttagattgctggagcgcattccattaacgcgtgagccgcagacttggccactt
gaactttctcctatggtcggtgatgaacagccaatggtgctgctcgatacagagacaacc
ggactgtctgccgatgacgagtccattattgagcttggtatggttaaggtgctttacagt
ccctcggctaagcgaattgtgtcgattgttgatgtgatcagtttgtatgaagatcccggc
aagccaatccccgagctgattacagagttaaccggtattaccgatgacatggtgcgaggc
cagcacattgatgattcactggtagcgagttggctatccgatgatccgctggtggttgca
cacaatgcacagtttgatcgtcctttctttgaaaatcggtttgctgcattaggccatcta
tcttgggcctgttcagccagtggcatagattggaaggcgctgggttttgaaagtcgaaag
cttgagtacctgctgcttcgcttaggttggttttatgaaggacaccgagctgcaaccgat
tgtttggcgatggcctggttgttccatttgttgcccgagtccgttgcaaacttgttgtct
gaagcggacaggcgaactgtgttagttcgtgcgtttggtgcgccgtttgacgtaaaggac
tatttaaaagagcgtggttaccgctggcatgacggtgttaaaggtgctaacaaacattgg
tggcgcgaaatcagcgaagacgagttgccgcaggaacaaacttacctagatgatttgtac
catcgtggctcagaacatgcccactatgactacaaagatgcccgcaatcgatttaaagct
ttgtag

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