Vibrio parahaemolyticus UCM-V493: VPUCM_0897
Help
Entry
VPUCM_0897 CDS
T03116
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPUCM_0897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vph03019
]
VPUCM_0897
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_0897
Enzymes [BR:
vph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VPUCM_0897
Messenger RNA biogenesis [BR:
vph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPUCM_0897
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VPUCM_0897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Enoyl_reductase
DDE_3
Motif
Other DBs
NCBI-ProteinID:
AHI98855
LinkDB
All DBs
Position
1:complement(979438..981402)
Genome browser
AA seq
654 aa
AA seq
DB search
MYSSLSPKKGFPNMQSTQLLQTLQSVFGFDSLRQGQQPVIESVMNGYSAAAIFPTGSGKS
LCYQLPATMLPNLTLVISPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNG
EIKILMISVERLKNERFREFIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNI
PQTLLLTATATPAVIEDMKNKFDIASDHITVTGFYRSNLDISVIPCEESEKQTQLNTIVA
AAPKLPTIVYVTQQQTAEQVAKSLIHIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVA
TIAFGMGVDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFV
FGDTPERSSISYVLGQIKEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKVIEAKFS
YFAEYRFKFLQNQQFIVNQFQGERREFVEAIFTCSTKAKVWCQVDLDALWMHYHSERSRV
VAALDYFHQNGWVELESKQLTDVYSVLPDTQNIEDITQHLYELFQSKERKDIDRIHAMLG
LFQSSDCLSHQLASYFADHNAPAHCGHCSVCRGQRSVFPPRIYDQPEPAVASAWIAGFVQ
LSPSAISNEAIARFLCGISTPLISQLKALKLSGYGALANVSFEQVLQLVESVRE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtactctagtctatcaccgaagaaaggtttccctaacatgcaaagtacccagttacta
caaacgcttcaatccgtgtttggttttgactcattacgccaaggccaacaaccagttatt
gaatcggtcatgaatggttactctgcagcagcaatattcccaacgggctcgggcaaatct
ctttgttatcaactccccgccaccatgctgccaaacctcactttagtgatctcgccatta
ctggcgctaatgaaagatcagctgagctttttgcaaagcaaagggatcgctgccgcttct
attgatagcagccaaagcagagaagaagcgcaacgcgtaatggttggagtcaaaaacggg
gaaatcaaaattttgatgatttctgtcgaacgcctcaaaaacgagcgctttcgcgagttc
attcgtcaagtgccaatctctttgatggtagtcgatgaagcgcactgtatctctgagtgg
ggacataacttccgtccggattacctcaagttgccgcaatatcagcgagaactgaatatt
cctcaaaccttattgctgaccgccacagcaacgcccgccgttattgaggacatgaaaaat
aaattcgatattgcgagtgaccacattactgtaactggcttttaccgttcgaacctcgat
atttcagtcatcccttgcgaagagtccgaaaagcaaacgcaactcaacacgattgtcgcc
gcagcccctaaactgccaaccatcgtttacgtaacgcaacagcaaactgcagagcaagtg
gctaagtcattgatccacattggcgttaacgctcatgcgtatcatgcaggaatgaaaagt
gaagttcgtgagcaaatacaacagcaatttatggcgggccaaattgactgcattgtggcc
acgattgcctttgggatgggtgtcgacaaatccgatattcgccgagtgatccactttgat
ctgcctaaatccattgaaaactatgcccaggaaataggtcgagcaggacgagacggacaa
cgctctgaatgcattctgcttggcaatacttctgggctaactgtattagaaaactttgtg
tttggcgacacgcctgagcgctcttcgattagttatgtattgggtcaaatcaaagagcac
caacctcagtgggaagtcgtgccactacgtttgtctcgcgagagcaatatccgccagtta
ccactcaagacgctgttggtgtatttagagcttgcgaaagttatcgaggctaagtttagc
tactttgccgaatatcgattcaaattcctacaaaatcagcaattcatcgttaaccaattc
caaggagaacgacgcgagtttgtagaagccattttcacttgttcaaccaaagcgaaagta
tggtgccaagtcgatctcgatgctctttggatgcattatcactcggaacgtagccgcgtt
gtcgctgcactggattactttcatcagaatggttgggttgaactagaaagcaagcagcta
accgatgtgtattccgtcttgcccgatacacagaatatcgaagacatcacgcaacatctg
tacgagctgttccaatctaaagagcgcaaagacatcgaccgaattcacgccatgttgggg
ttgttccaatcgtcagattgtttaagtcatcaattagccagttactttgccgaccacaat
gcccctgctcactgcggtcattgttctgtgtgtcgaggacagagatcggtgttcccacct
cggatttacgatcaacctgaaccagcagtcgcctccgcttggattgcagggtttgtccaa
ctttccccttctgcaatcagtaacgaagccatagcccgattcttatgtggcatcagcaca
ccgttgatcagccaacttaaagccttaaagctatctgggtatggtgcattggctaatgtg
tccttcgaacaggtactacaattagttgaaagtgtgcgggaatag
DBGET
integrated database retrieval system
