Vibrio parahaemolyticus UCM-V493: VPUCM_0972
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Entry
VPUCM_0972 CDS
T03116
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vph03016
]
VPUCM_0972
Enzymes [BR:
vph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VPUCM_0972
Transfer RNA biogenesis [BR:
vph03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VPUCM_0972
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF7018
Motif
Other DBs
NCBI-ProteinID:
AHI98930
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All DBs
Position
1:1060902..1062068
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AA seq
388 aa
AA seq
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MIECQRFAGIFYSEKHVNYQIITKNKDLEKVCAQARDADVVMLDTEFVRIRTFYPQLGLI
QLFDGKHLSLIDPTELTDMTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQ
LMAAFLGHGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYE
KLLDKVTDAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQLKPSELAVLKPLATWR
YREAIKRDLALNFIFKEGDLLTVARLGLTSFKKMEAEGMDSRAVNRHGTKIAAIVKKAKQ
TPPEEYPAKIDRLMDYPGYKQVFKNMKDVVKSAAQKSGLATEFLASKKQINQLISWVWKK
DRDPARLPDVMQGWRLELLGEKMNKALK
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatgccagcgttttgctggcattttttatagcgagaagcatgtgaattatcag
attattactaaaaacaaagacctagaaaaagtttgtgctcaagcaagagacgcagatgtt
gtaatgttggataccgagttcgtacgtatcaggactttttatccgcaactaggtttgatt
cagcttttcgacggcaagcacttgtcccttatcgatccgacagaattaacggacatgaca
tctttcatcgaactattgaaagatgcgtcggtacttaaagtgcttcacgcctgtggcgaa
gatttagaagtattccaaaatgcatttggttgtacgccatttccaatggtcgatacacag
ttaatggcggcgtttcttggccacgggctgtcaacaggtttcgcaacgctggtggaagaa
tacttaggtgttgcgttggacaagagtgaatctcgcaccgactggatggctcgtcctctc
acgcaaaagcaacttgattatgcagcggcagacgttcactacttgttgccactttacgaa
aaattgctcgataaagtcactgacgctggttggtgggaagcggtgcagcaagagagcgac
ttgttggtttccaaacgcattcgcgaaactaacgaagaaaatgcgtaccttgatattaaa
ggagcatggcaacttaaaccgtcagagttagctgtgttaaagccgctagcaacttggcgt
tatcgtgaagcaatcaagcgcgacttagcactaaacttcattttcaaagagggtgatttg
ctaacggttgctcgtttaggtttaacaagctttaaaaagatggaagcggaagggatggat
agccgcgcggtcaatcgtcacggtactaaaattgcggccatcgtaaaaaaggctaagcaa
acgccacccgaagaatacccagctaaaattgatcgcctgatggattaccctggctataag
caagttttcaaaaacatgaaagatgtcgtgaaaagtgctgcgcaaaaatcagggttagcg
accgagtttttagcatcgaaaaagcagattaaccagctcatcagttgggtgtggaagaag
gatcgtgatcctgctcgcttgcctgatgttatgcaaggttggcgtctagagttattgggc
gaaaaaatgaataaggcgttgaaataa
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