Vibrio parahaemolyticus UCM-V493: VPUCM_1021
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Entry
VPUCM_1021 CDS
T03116
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
vph
Vibrio parahaemolyticus UCM-V493
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vph03032
]
VPUCM_1021
03036 Chromosome and associated proteins [BR:
vph03036
]
VPUCM_1021
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_1021
DNA replication proteins [BR:
vph03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VPUCM_1021
Chromosome and associated proteins [BR:
vph03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
VPUCM_1021
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
VPUCM_1021
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
ACP_syn_III_C
Arteri_nsp7a
GTP_EFTU_D2
DUF7342
HU-CCDC81_euk_1
VWA_2
Nup214_FG
Motif
Other DBs
NCBI-ProteinID:
AHI98979
LinkDB
All DBs
Position
1:1114397..1114669
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AA seq
90 aa
AA seq
DB search
MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG
RNPKTGEEIQIAEAKVPAFKAGKALKDACN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaaactcaattagtagaacaaatcgcagaaaatgcagacatctctaaagcgtca
gcgggtcgtgctctagatgcattcatcgaagcagtaagtggcacacttcagtctggtgat
caagttgctctagttggcttcggtacattcagtgttcgcactcgtgctgcacgtactggt
cgtaacccaaaaactggtgaagaaatccaaatcgcagaagcaaaagtaccagctttcaaa
gcaggtaaagcactgaaagacgcttgtaactaa
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