Vibrio parahaemolyticus UCM-V493: VPUCM_1088
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Entry
VPUCM_1088 CDS
T03116
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VPUCM_1088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_1088
Enzymes [BR:
vph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VPUCM_1088
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VPUCM_1088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
AHI99046
LinkDB
All DBs
Position
1:complement(1191581..1195042)
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AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPTERGDKKQLGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPNQRGGVTIVPVSTVLQRQS
PREFLLQHTLMVKTGDNFSLENLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSAD
PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKEAIEDFRTRWRTQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPEDSQLITYGDIEAAVDTFLNDV
EYRYDQKKIDPLRPLLAPHDLWLKKDELFAHFKQLPQAQLSLEKVVKRAGRQNLAVQTLA
ELGVQQQNKEPLSRLRQFSEQFTGKIIFSVESEGRREALTELLQGIKVRPVVQESLYHAL
ESDHRFTLILGSAEHGFIHDELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ETAPLHKLGGEAWSKARRKAAEKVRDVAAELLDVYAKRELKSGFKFALDRGQYATFKATF
PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVREREESVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDDLLREQTEVELRIPALLPDDYI
PDVNTRLSMYKRIASVSDSDELSELKVELIDRFGLLPDAAKNLLAVSELKFAAGSIKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLADRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagcaacgatactttccgtcaccaatccaacagagcgtggcgacaaaaaacaa
cttggcaacttacccggtgcagcgctgccactcgccattgccgaactggccaagcagcat
tcaagtcactcactactggttgtgccagatccgcagatcgcgttgaaactgcaagcagaa
atcgaacagtttaccgaccaaccagtaagccttttccctgattgggaaacgttgccatac
gacaatttttctccacaccaagagatcatttctgaccgtattgctcgcctataccaactg
ccaaatcaacgtggcggcgtcactatcgtgccagtcagcactgttcttcagcgccaatct
ccgcgagaatttttgttacagcacacactaatggtcaaaacaggcgataatttctcgcta
gaaaacctgagagtgcaactagagaactcgggttaccgtcacgtagaccaagtatttggg
ccgggtgaatacgcgagccgaggttcgattctcgacttattcccgatgggcagtgctgat
ccttaccgtattgactttttcgatgatgaaatcgacaccattcgcactttcgatccagaa
aatcagcgttctatcgaagatattcagcaaatacaattgctgcctgcgcatgaattccca
acgacgaaagaagcgattgaagatttccgtactcgttggcgcacccagtttgaggcgaga
cgcgagccagaatccatctacatgcaagtcaccaaaggaacgtggccggcaggcattgaa
tactggcaaccactgttcttcgaccataccgaaaccctgttcgactacttacctgaagat
tcgcagctgatcacatacggcgacattgaagcagctgtcgacacattcttaaatgacgtc
gagtatcgctacgatcaaaagaaaattgatcctctgcgtccacttcttgccccgcatgat
ttgtggctcaagaaagacgaattgtttgcacacttcaaacaacttcctcaggcacagctc
agcctagagaaagtagtgaaacgtgctggccgccaaaacttagcggtacaaacactggca
gaacttggcgttcaacagcaaaacaaagagccattgtctcgtctgcgccaattcagcgaa
caatttacgggcaaaatcatcttttccgtggaatcagaaggtagacgcgaagccctgact
gagcttctgcaaggcatcaaagttcgcccagtggtgcaagaatcgctgtatcacgctttg
gagtcagaccaccgtttcacgttgattcttggttcagcagaacacgggtttattcatgac
gaactgaatttcgcgctgatatgcgaaagtgacttgcttggcgatcgcgtaattcaacgc
cgtcgcaaagacaaaaaagccgtcaacagtgacactgttattcgccaccttgccgaactg
aaaccaggccaacctgttgttcatattgaccacggcatcggccgctacatcggtctgcaa
acccttgaagcggggggaatgaaaaccgagtatgtgacgcttgaatatcaaaacgacgcc
aaactttatgttcccgtttcctcgctaaacttgatcagccgttactctggcggcgctgaa
gaaacggctcctctgcacaaacttggcggagaagcgtggtcgaaagcacgtcgaaaagca
gctgagaaagtacgcgatgttgcagcagagctacttgatgtatacgcgaagcgtgagcta
aaatcgggctttaaatttgccttggatcgaggccaatacgcgaccttcaaagcaacattc
ccgtttgaagaaaccgatgatcaagccatggcaatcaacgcggtgctttccgatatgtgc
caagcaaaagccatggatcgtttggtgtgtggtgacgttggctttggtaaaacagaagtt
gccatgcgtgcggcctttgttgctacggacaacagcaaacaagttgccgtactcgtgcca
acaaccctgcttgctcagcagcattttgaaaacttccgtgaccgcttcgcgaacttgcca
atccgagtcgaggtgctttctcgctttaaatcagccaaagagcaaaaagtgattttgcaa
gatgtggcggatggcaaagttgatatcgtcgtcggtacgcacaaattgctctccagcgac
atcaaattcaaagatttgggtttgttgattgtcgacgaagagcatcgcttcggtgttcgt
caaaaagagaaagtcaaagcgatgcgcgccgatgtggacattcttaccctaacggcaacg
ccgattcctcgtacgctgaacatggcaatgagtggtatgcgtgatttgtcgatcatcgcc
acaccaccagcacgccgtttggccatcaaaacatttgtgcgtgaacgtgaagagtccgtg
gtgcgagaagccgtactgcgtgaaatcatgcgtggtggccaggtttacttcctgcacaat
caggttgaaaccattgaaaaaacggcagaagacttacaaaaactcattccagaagcccgt
attaccgtggcacacggccaaatgcgtgaacgcgaactagaacgcatcatgaatgatttc
taccaccagcgctttaacgtgttggtgtgtaccaccatcattgaaacgggtatcgacgtt
ccgaccgccaacacaatcattatggatcgtgctgacaaccttggcttagcgcaactgcat
caattgcgtggccgtgttggtcgctctcaccatcaagcttatgcttatttgttaacgcca
catccaaaagcaatgaccaaagatgccattaaacgtctcgatgccattgcttcactggaa
gacttaggcgcgggctttactctggcaacgcacgatttggaaattcgtggcgctggtgaa
ctgcttggtgacgaacaaagtggtcaaattcaatctgttggttttacactgtatatggaa
atgcttgaacaagcggtcgaagcgttgaaagaaggtaaagagccatcattggatgatctg
cttcgtgaacaaacagaagtggaactgagaatcccagcgctactgcctgatgattacatt
ccagacgtcaatacgcgtctgtcgatgtacaaacgaattgcgagtgtgagcgacagcgat
gagctatccgaattaaaagttgagctgatcgaccgctttggcttacttcctgatgccgcg
aagaacttgctggctgtctcagaattgaaatttgccgcaggtagtattaaagcgaagaag
atagaagcccatgataaaggtggatttatcgagttttaccctgatgctgacataaatcca
gcgtatttagttaaactcctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattggcggaccgacgtaaacgcattcagtttgtacaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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