Vibrio parahaemolyticus UCM-V493: VPUCM_1214
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Entry
VPUCM_1214 CDS
T03116
Name
(GenBank) putative transcription regulator TxR
KO
K18219
sigma-54 dependent transcriptional regulator, tetracycline resistant transcriptional regulator
Organism
vph
Vibrio parahaemolyticus UCM-V493
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vph03000
]
VPUCM_1214
Transcription factors [BR:
vph03000
]
Prokaryotic type
Helix-turn-helix
Other families
VPUCM_1214
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
HTH_28
HTH_23
Mg_chelatase
AAA_5
AAA
HTH_29
MCM
HTH_17
HTH_50
HTH_22
HTH_Tnp_ISL3
AAA_2
AAA_16
HTH_7
HTH_1
Mga
RWP-RK
HTH_30
HTH_IclR
HTH_11
HTH_Tnp_1
HTH_psq
HTH_Tnp_1_2
HTH_3
AAA_22
NUMOD1
CENP-B_N
I-TevI_DNA-bd
Motif
Other DBs
NCBI-ProteinID:
AHI99172
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Position
1:complement(1355941..1356897)
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AA seq
318 aa
AA seq
DB search
MMKLRKSSTKQTVQFSEAELYPLIGNSACIHELRNAIKKYAQCDAEVLIQGETGVGKGLC
ARLIHQLSSRRSSPFVEVNCGAIPSGLIASELFGHEKGAFTGAISDRIGFIQKAHKGTLF
LDEIGDMPSDLQIHLLHFLESKQIHKVGADKFIDVDCRVIAASHVDLKSEVVQGEFREDL
FYRLNILPLTIPPLRKRGKDILMLSEHFLTDLSHGQVHNMSEEVKAKLLKHRWPGNVREL
RNVIQRAIVMCEDNTLLVADLGLENSERQLLPSVDQIDLDYLLQAIEENKHNMSAAARHL
GISRTTLYRLIKKYNINI
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaactgcgaaaaagtagtaccaaacaaacggtgcaattcagcgaggcggagcta
tatcctcttattgggaatagcgcttgtatccacgagcttcgaaatgccattaaaaagtac
gcgcaatgtgacgctgaagtactcatacaaggtgaaactggtgtgggtaaagggttgtgt
gctcgactcatccatcagttatctagtcgacgctcatcaccctttgtagaggtcaactgc
ggtgcgattccaagtggcttgattgcttccgaactttttggccacgaaaaaggtgcattt
acaggtgccatttctgaccggattggttttattcaaaaagcacacaaaggcactttattt
ctcgatgagattggagatatgccttcggatcttcaaatacatctccttcactttttagaa
agcaaacaaatacacaaagtaggtgcggataaatttatcgatgttgattgtcgtgtgatt
gccgccagccacgtggatttaaaaagcgaagtcgtacaaggagaatttagggaggatcta
ttttatcgactcaatatattaccgctgaccattcctccacttcgaaaaagaggcaaagac
attttgatgctttctgagcactttttaacagatttatctcatggtcaagtacacaacatg
tccgaagaagtgaaagcaaaactgcttaaacatcgttggcctggaaatgtgcgtgagctg
cgtaatgtgattcagcgggcaattgtcatgtgtgaagacaataccctactcgttgctgat
ttagggcttgagaacagtgaaaggcaattactcccttctgttgatcaaattgacctcgac
tatttgttacaggccatcgaagaaaataaacacaatatgagcgcagccgcacgccatcta
ggtatttctagaacaacgctttataggctgattaagaagtacaatatcaacatctga
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