Vibrio parahaemolyticus UCM-V493: VPUCM_1315
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Entry
VPUCM_1315 CDS
T03116
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03030
DNA replication
vph03430
Mismatch repair
vph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VPUCM_1315
03430 Mismatch repair
VPUCM_1315
03440 Homologous recombination
VPUCM_1315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vph03032
]
VPUCM_1315
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_1315
Enzymes [BR:
vph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VPUCM_1315
DNA replication proteins [BR:
vph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VPUCM_1315
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VPUCM_1315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
CAF1
Motif
Other DBs
NCBI-ProteinID:
AHI99273
LinkDB
All DBs
Position
1:complement(1470467..1471186)
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AA seq
239 aa
AA seq
DB search
MIKKLFQKPAIQWPTKFQQKLELVNDENLVAFYGSELPAPNTPISEVEFVALDFETTGLN
PEKHDIITIGLVPFNLRRIFLRDARHWKVRPQKKLDEDSVIIHGITHSELIDAPDLSDIL
GELLPCLSGKIIVVHYRRIEREFLDQALKARIGEGIEFPVLDTLQIEENIQKRSAGGIWN
RLKGKRPESLRLAQSRRRYGLPDYSPHHALTDAIATAELLQAQMAHHYNDDQPISDFWL
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaaaagctatttcaaaagcctgcgattcaatggccaaccaagtttcagcaaaag
ttggagctcgtcaatgatgagaatcttgtcgccttttacggcagcgaattaccagcgccc
aatacccccatttcagaggttgaatttgtcgcgttggatttcgaaacgacagggctcaat
cccgaaaaacatgacattattactatcggtttagtacctttcaatctgagacgtattttt
ctgcgcgatgctcgacattggaaagtaaggcctcagaaaaagttggatgaagattccgtt
atcatccacggtatcactcacagcgaattgattgatgcgccagatctgagcgatattttg
ggtgagttgctgccttgcttaagcggcaaaatcatcgttgtgcattaccgtcgaatcgag
agagaattcttagatcaagcgctgaaagcgcgtattggggaagggattgaatttcccgtg
ttagacacgctacaaatcgaagagaacatccaaaagagaagcgctggcggcatttggaat
cgcctgaaaggaaagagaccagagtctctgcgtttggcgcagtctcgacgccgctatggg
ttaccagactactctccgcatcacgcgttaactgatgcgattgctacggccgagttgctt
caggcgcagatggcgcatcactacaatgatgaccaaccaatcagtgatttttggttgtag
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