Vibrio parahaemolyticus UCM-V493: VPUCM_1805
Help
Entry
VPUCM_1805 CDS
T03116
Name
(GenBank) DEDDh 3'-5' exonuclease domain of the epsilon subunit of DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03030
DNA replication
vph03430
Mismatch repair
vph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VPUCM_1805
03430 Mismatch repair
VPUCM_1805
03440 Homologous recombination
VPUCM_1805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vph03032
]
VPUCM_1805
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_1805
Enzymes [BR:
vph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VPUCM_1805
DNA replication proteins [BR:
vph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VPUCM_1805
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VPUCM_1805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DUF3487
DDE_Tnp_2
Motif
Other DBs
NCBI-ProteinID:
AHI99763
LinkDB
All DBs
Position
1:complement(1934560..1935306)
Genome browser
AA seq
248 aa
AA seq
DB search
MMWLAKSKASTPLLDTSQTPEWSVLFEQLAEQAQDQRLKRYYSTPMVNGDTPLKEVPFVS
VDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWIVNPNRELNEESVVIHGITDSEVK
NAPQLTQILGEILDALAGKVVLVHYKNIERQFFYNALLNTIGEGIQFPVVDTLDIEYALQ
RRECSGIWNKLKGKKPGSVRLGHARERYGLPAYQPHHALTDALATAELFQAQLQYHFNRD
MPISAIWQ
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgatgtggttggcaaaaagtaaggcgagtacaccgctgctcgatacttcgcaaacgccg
gagtggtcagtattgtttgagcagttggcagagcaagcgcaagatcaacggttgaagcga
tactattcgactcctatggtgaatggggatacgccattaaaagaggtgccgtttgtctcg
gtagattttgaaacgacgggcttaaatgcagaagaggatgccattcttaccattggtctt
gtgccgtttacgattgaccgagtgcagtgcagtggttcagcgcattggattgtaaatccg
aaccgagagcttaatgaggagtctgtcgttattcatggcattacggattctgaagtgaaa
aacgcgccccagttaacacaaatactaggtgagattttggatgcgctcgctggtaaggtg
gtgttggtgcactacaagaatatcgagcggcagtttttttataatgcgcttttaaacacc
attggcgaagggattcagtttcccgtcgtcgatacattggatatcgagtatgcacttcaa
cgccgagaatgttcaggcatctggaacaagttaaaaggtaagaagccagggtcagtgagg
ttggggcatgctcgggaacgatatggtctgcctgcttatcaaccgcatcacgcattaacg
gatgcattggcgacggcagagttgtttcaagctcagttgcaatatcactttaaccgagac
atgccaatttctgctatttggcaataa
DBGET
integrated database retrieval system
