Vibrio parahaemolyticus UCM-V493: VPUCM_20039
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Entry
VPUCM_20039 CDS
T03116
Name
(GenBank) ADA regulatory protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VPUCM_20039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vph03000
]
VPUCM_20039
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_20039
Enzymes [BR:
vph01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
VPUCM_20039
Transcription factors [BR:
vph03000
]
Prokaryotic type
Helix-turn-helix
AraC family
VPUCM_20039
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VPUCM_20039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AHJ01160
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Position
2:37154..38521
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AA seq
455 aa
AA seq
DB search
MFIHPHTSLTFEQCQKARVSRDSRFDGRFYVAVKTTGIFCRPICPANLPKEENVEYFTDK
AQALKAGYRPCLRCRPDSAPGSWAWKGVETTFQRAISLIDRGELHHHSVSELAERVGISD
RYLRMLFEQYLGMSPKQYAQYQQLMFAKQLLHSSSMSVTEVGFAAGFNSTRRFNDAFQKF
LKLTPSQVRRREFDGVSTNRIALSYRGELNWQHMLDFYRLRAIEGVERVSGESYQRNVCL
DNSKAWFKASKGEGNLELEFEIEEVAKLQNLVSGIRRMFDLDTDICTVEQHLDYVAPGLV
SNRGIRIPGVWNAWEAGVRAVLGQQVSVKAAIGQLNLLVKTLSGDADKRFFPTPDAIANA
DVSFLRMPQSRKETLVRFAQFMQSNAETDPQQWLALKGIGPWTVSYAQLRGQSQPDCFLD
KDLVVKKAMQRYPSLNTHTAAPWGSYATFHLWNQS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtttatccatcctcatacatcgttgaccttcgagcagtgccaaaaggcgcgagtgtcg
cgagacagccgttttgatggtcgattttacgtcgcggtaaaaaccacagggattttctgc
cgaccgatttgtccggcgaacctacccaaagaagaaaatgtagagtacttcaccgataaa
gcccaagcacttaaagcgggttatcgtccttgtttgcgttgtcgcccagacagcgcaccg
ggatcgtgggcatggaaaggcgtagaaacaacatttcaacgcgctatttcattgattgat
agaggagagctgcatcaccactcggtatctgaactggcagagcgcgttggtatttctgat
cgttacttgcgtatgttgttcgagcagtatctcggcatgtcaccaaaacagtacgcgcaa
tatcagcagttaatgttcgccaagcagttgctgcattccagttcgatgtcggttacggaa
gttggcttcgccgctggttttaacagcacgcgccgtttcaacgatgcattccaaaagttt
ctgaagctcacgccttctcaagttcgtcgaagagaatttgatggcgtgagcacgaatcga
attgcgttgtcttatcgtggcgagttgaattggcaacacatgctggatttttaccgatta
agagccattgagggcgtggagcgggtgagcggcgagagttaccaacgcaacgtttgtttg
gataacagcaaagcgtggtttaaggcgagcaaaggtgaaggaaaccttgagcttgaattc
gaaattgaagaagttgcgaagctgcaaaatttagtgtctggaatacgtcgtatgttcgat
ctcgacaccgatatttgtactgtcgagcagcatttggattatgtggcgccggggcttgtt
tcgaaccgaggcattcggattcctggggtgtggaatgcttgggaagccggggttagagca
gttttgggtcaacaagtgtcggtcaaggccgcgataggccagcttaacttattggtaaaa
acgctcagtggtgatgctgacaagcgctttttcccgacgccagatgcgattgcgaatgcc
gacgtgagttttttgcggatgccgcaaagtcgtaaagagacgttggtgcgtttcgctcag
tttatgcaaagcaacgcggagacggatccgcaacaatggttagcgctgaaaggcattgga
ccttggacggtcagttatgctcaactgcgtgggcaatcccaacccgattgctttttagat
aaagacttagtggtgaaaaaagcgatgcagcgctacccatcactcaatacgcacactgca
gccccttggggaagctacgcgacgtttcacttatggaatcaatcatga
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