Vibrio parahaemolyticus UCM-V493: VPUCM_20080
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Entry
VPUCM_20080 CDS
T03116
Name
(GenBank) Exopolygalacturonate lyase
KO
K22994
pectate disaccharide-lyase [EC:
4.2.2.9
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph00040
Pentose and glucuronate interconversions
vph01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
VPUCM_20080
Enzymes [BR:
vph01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.9 pectate disaccharide-lyase
VPUCM_20080
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Gene cluster
GFIT
Motif
Pfam:
Pel9A-like_beta_helix
FTP
Glucodextran_B
Motif
Other DBs
NCBI-ProteinID:
AHJ01201
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All DBs
Position
2:76935..79163
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AA seq
742 aa
AA seq
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MKKHTLALCLAAILAPAAHAAEIKVEDLTWKAITFGQSTDMNFGSTILPEKVGVNQVTVN
GDVVAAGKLASTFTIESRGGKLANSHEGLTFYYTELPTDVNFTLSADVVLEQLGPETGAT
PNRQEGAGLMVRDILGAERLVPQPEGHEEFPSASNMVMNLMRSHTRTNDGMTNINASFRE
GVYQPWGTPGNRLSRVDYVEGVPYGTAETYRMTLTRTNDGFKVSYRNGEKFVEQAVKGAN
ANIVEMQNSDSQYVGFFASRNAKMTVSNIDLQLAAADTVDAPKYAAKQGELVFQIASSPR
SATKVYPVQARANYSGEFEVLHNGKVVAKQTVTAGELFSQWLTLDSGANQMEVRFTAIDG
PNKETQAHRYSVDVVSLPDPMTLYVAPNGSDKGNGSQAQPLDFATAVELLPAGGTIILKD
GDYQGMEIPLTASGSADKLKHLRAEGDNVRFVSELRHEANYWHYQGIEVAGAQFIVHGSH
NTFEKMVTHGAPDTGFVISSPENIGRALWASYNQVIESESYNNMDPSQINADGFAAKMRI
GDGNTFIRCLSHHNIDDGWDLFNKVEDGANGAVTILDSISFSNGRTLDVANKGGTIGNGF
KLGGEGIPVPHVVKNSLSFNNNMDGFTDNFNPGALVLSDNVSIDNKRFNYLFRKSPYSGE
IEQGTFTNNRSYRFHVSSKYDDVINSAKSTGNALVENGTTYTSDGKAVDSKMLAPLKQAS
VIDTQQAIPGKQEAMQLKQLIH
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacacactttagccttgtgtctggcggccatattggccccagccgcacacgct
gctgagattaaggtcgaagacctgacttggaaagcgatcacttttggtcaatcgaccgac
atgaactttggctcaaccattttgccggaaaaagtcggcgtgaaccaagtgacggtcaat
ggtgatgttgtcgctgctggtaagttagcgtccacatttaccattgaaagccgcggcggc
aagttagccaactcgcatgaaggactcaccttttactacaccgagctaccaaccgatgtg
aactttaccctcagtgccgatgtggtgcttgaacagcttggcccagaaacgggcgcgaca
cccaaccgccaagaaggtgcaggtttgatggtgcgcgacattctaggtgccgagcgttta
gtgccgcaacctgagggccatgaagagtttccgtctgcatcgaacatggtgatgaaccta
atgcgttctcacacccgcacgaacgatggcatgaccaacatcaacgcatcgtttcgtgaa
ggcgtttatcaaccttggggaacgccgggtaaccgtttaagccgtgtcgattatgtggaa
ggggtgccttacggcacggctgaaacctaccgcatgacgctgacacgcaccaatgatggt
ttcaaagtcagctaccgtaatggcgaaaaatttgttgagcaagcggtaaaaggcgcgaat
gccaatatcgttgaaatgcaaaactcagactcgcaatacgtcggcttctttgcgtcacgc
aatgcaaaaatgacagtgagcaatatcgatttgcagcttgctgcggcggataccgtggac
gctccaaaatacgcggccaagcagggagaattggtattccaaatcgcttcttcacctcgc
tctgcaaccaaggtgtatccggttcaagctcgtgccaactactcgggcgaatttgaagtt
ctgcacaatggcaaagtggtagcgaagcaaaccgtgacggcgggtgagctgttcagccag
tggctgacacttgatagcggcgcgaatcaaatggaagtgagattcaccgccattgacggc
ccaaacaaagagacacaagcgcaccgttacagcgttgacgttgtttctctgccagaccca
atgacgctgtatgttgcaccaaacggaagcgacaaaggcaatggatctcaagcgcaaccg
cttgatttcgctaccgcagtagaactgcttcctgctggtggcaccatcattttgaaagat
ggcgactaccaagggatggaaattccgctgacggcgagtggcagtgccgacaagctcaag
catctacgtgcggaaggagacaatgttcgctttgtttcggaacttcgtcacgaggcaaat
tactggcattaccaaggtattgaagttgcgggtgcgcagttcattgttcatggtagccac
aacaccttcgaaaaaatggtgacacacggcgcgccagatactggtttcgtgatctcctct
cctgaaaacattggccgcgcactatgggcaagttacaaccaagtgattgaaagcgaaagc
tacaacaacatggatccttcgcagatcaacgcagacggttttgcggccaagatgcgtatc
ggcgatggcaacactttcatccgttgtttgtctcaccacaacattgatgacggttgggac
ttgttcaacaaagtggaagatggcgcaaacggtgcggtgactattttggattccatctcg
ttcagcaacgggcgcacactcgatgttgccaacaagggtggcacgattggtaacggcttc
aagctaggcggcgaggggattccggttccacatgtggtgaaaaacagcttgtctttcaat
aacaacatggacggatttacggacaactttaaccctggtgcactggtattgagcgacaac
gtgtcgattgataacaagcgcttcaactacttgttccgtaagagcccatattccggcgag
attgagcaaggcacgttcaccaataaccgttcttaccgattccatgtcagcagcaaatat
gacgacgtgatcaacagtgcgaaatcgactggcaatgcgttggtcgaaaatggcacgact
tacaccagtgatggcaaagcggtcgacagcaaaatgctcgcgccattaaagcaagcgtca
gtgattgatacccaacaagccattccgggtaagcaagaggcgatgcagcttaagcaactt
attcactaa
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