Vibrio parahaemolyticus UCM-V493: VPUCM_21035
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Entry
VPUCM_21035 CDS
T03116
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPUCM_21035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vph03019
]
VPUCM_21035
03009 Ribosome biogenesis [BR:
vph03009
]
VPUCM_21035
Enzymes [BR:
vph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VPUCM_21035
Messenger RNA biogenesis [BR:
vph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPUCM_21035
Ribosome biogenesis [BR:
vph03009
]
Prokaryotic type
rRNA helicases
VPUCM_21035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
AHJ02156
LinkDB
All DBs
Position
2:complement(1115653..1117584)
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AA seq
643 aa
AA seq
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MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLDQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKSLDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAASKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRREGGFRGNREGGNRGGERREGGRREGGFRGN
RDGNREGNREGGERRFDRNRGGDHRGNYRGERGHGRGRRTQDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaagctagatcttgatcaacgtaaaccacaagcaatcgttctt
gctccaactcgtgagctagcgatccaggttgcggctgaaatgaaaaaccttggtaaaaac
atcaagggtcttaaagttctagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gcgcttaaaaatggtgcacacgttgttgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgtctacatcttgacgaagtgaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctcctgaatca
gcacaacgcgttctattctctgcaactatgccaccaatgctgaaaaacattgttgagcgc
ttcctacgtgatcctgtaactgttgacgttgctggtaaaaaccacactgtagacaaagtt
caacagcagttctgggtagtgaaaggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgatgcgtcaatcgtattcgtacgtactcgtcaagacaccgagcgt
ctagctgactggctatctgcacgtggcttcaaagctgctgcactgcacggtgacattcct
cagtctctacgtgagcgtactgttgaccacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgttgcacgtggtctagacgttccacgtattactcacgtatttaactac
gacatcccatttgatgttgagtcttacatccaccgtatcggtcgtactggccgtgctgga
cgtaaaggtaaagcgatccttcttgttcgcactaaccaaatccgcatgcttcgcactatc
gagcgcgtaactaagtcatctatggaggaaatccaacttcctctacgtgaccaagttgct
gaagctcgtctaaacaagctagctgctgaactggaagctgagaaagagcacaagtcacta
gacaaattcgctgagctagtagagaaactacaaacttctctagagatcgatcctgcgatg
cttgctgcaatgcttcttaagcgtcagcaaggtaaacgtcctctgttctacattggcgaa
gacccaatggttgaagcgattgagcgtgacaagcagcgtcgtaaagaacgccgtgaaggt
ggtcgtgaaggcggtcgtagcttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagatatcgttggcgctctagcaaacgagctaggc
ctaggtaaaggttctatcggtgcgatcaagctagcgcaaggtcacacattcgttcagcta
ccaaaagcaatgacttctgaagctgcgagcaagctaagcaaactgcgtatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgacgatttccgcgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgaaggtggtttccgtggtaaccgcgaaggt
ggcaaccgtggtggtgagcgtcgtgaaggcggtcgtcgtgaaggtggcttccgtggtaac
cgtgacggcaaccgcgaaggtaaccgtgagggtggcgaacgtcgtttcgatcgtaaccgt
ggtggtgatcaccgtggtaactaccgtggcgaacgtggtcacggccgtggccgtcgcact
caagacgcataa
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