Vibrio parahaemolyticus UCM-V493: VPUCM_21060
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Entry
VPUCM_21060 CDS
T03116
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPUCM_21060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vph03019
]
VPUCM_21060
Enzymes [BR:
vph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VPUCM_21060
Messenger RNA biogenesis [BR:
vph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPUCM_21060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHJ02181
LinkDB
All DBs
Position
2:complement(1146132..1147382)
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AA seq
416 aa
AA seq
DB search
MTDKTQQATFADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMVGGANTGSGKTA
AFSLPILQKILQQGESNARRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVF
GGVSVNPQMQALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEEL
NKILALLPEKKQTLLFSATFPEKVTTLAQHLLNDPVEVQLQSAEASTLVQRVFSVNKGEK
TAVLAHLIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDDFK
SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD
DYHHFKVIEKKNKFQLEREQVEGFEVEDDQSEAYFLPMKPRAKPAGTGKKKKKRNQ
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaaaacacagcaagcgacatttgccgatcttggcctgattccaaccttagtc
gagcgactagaagcgttagaatataaccaaccaacacctattcaatctcatgctattcct
catgtgcttgatggcagggatatggtaggcggagccaatacgggctcaggtaaaaccgcc
gctttctcgctgccaattttgcagaaaattcttcagcaaggtgaatcaaatgctcgtcgt
ggcaacttcgtttctcatctgattttggttcctactcgtgagctggcatcgcaggtggct
tacaacgttaaatcctactcataccatcttagagataagatcaaaacggttgccgtattt
ggtggtgtatccgtgaacccacaaatgcaggcgctgcgtggtggctgtgacatcattgtt
gcaacgccgggacgactacttgatctggtatcgagtaacgcgattaagctagaccaagta
aaaacgctcgtgcttgatgaagctgatcgtatgttgagcttaggatttaccgaagagctc
aataagattcttgccttactgccagagaagaaacagacgctgctattttctgccactttc
cctgagaaagtcacgactttggctcagcacttacttaacgatcctgttgaagttcagtta
cagagtgcagaagccagcactttggtgcagcgcgtgtttagtgtcaataaaggtgaaaag
acggcggtactcgcacatctaatcaaacagcatcaatggcgccagactttaatttttgtg
aatgctaagaatgcctgtaaccacctagctcagaaactgtcaaaacgcggcatcactgcc
gaagtttttcatggcgataaagggcaaggcgctcgtactcgcgttcttgatgattttaag
tctggtgagattcaagtactgattgctaccgatatcgcagcacgcggtctcgatattgaa
aaattgccagtggtgattaacttcgatcttccgcgtagtcctgccgattatatgcatcgc
atcggacgcagtggccgtgcaggggaagtgggtctaggtctatctcttatcgattacgat
gactaccaccactttaaagtgatagagaagaaaaataagttccagcttgaacgcgagcag
gtagaaggctttgaagtggaagacgaccaaagtgaggcctactttttaccgatgaagccg
cgcgcaaagccagcaggaacgggtaaaaagaagaaaaagcgtaatcagtag
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