Vibrio parahaemolyticus UCM-V493: VPUCM_2186
Help
Entry
VPUCM_2186 CDS
T03116
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vph03032
]
VPUCM_2186
03400 DNA repair and recombination proteins [BR:
vph03400
]
VPUCM_2186
Enzymes [BR:
vph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VPUCM_2186
DNA replication proteins [BR:
vph03032
]
Prokaryotic type
DNA Topoisomerases
VPUCM_2186
DNA repair and recombination proteins [BR:
vph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VPUCM_2186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AHJ00145
LinkDB
All DBs
Position
1:complement(2359106..2361736)
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSAE
EKARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVSELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKSD
FKLLVAQKDGVAFKPVNETETKAAISVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSDVSVKAEDLQGVDADAHKLYSLIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPP
ARFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGEVNWKAVLDNFFADFTGDLEKAELDESEGGMKLNHIVM
TDIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYVVEYGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVSELARFEERLPEKFKYLTTAPQEDPDGRPAVVRFSRKT
KENYVRSEDDGKPSGWTALYVDGKWEVTDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtctccagccaaggcaaagacgataaataagtac
cttggtaaggactttattgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaagaaagctgccgctatctcaacaaaagggatgagcgcagaa
gagaaagcgcgcgttaaaaaagaaaaagatcgtaaagcgctgatcaaaaaaatggggatt
aacccatatcatgactgggaagcgaactatcagattcttccgggtaaagaaaaagtcgta
agcgaactacaaaaattagccaaagatgctgattgcgtttatctcgcaaccgatttggac
cgcgagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgagtagtctttaacgaaattactaaaaatgctatccaacaagctttccagact
cctggcgagttaaatatggatggcgttaatgcgcagcaagcacgccgattcatggaccgc
gttgtaggtttcatggtttctccattgctatggaagaaagtggcacgtggcctgtctgct
ggtcgtgttcaatctgtagcggtgaagctattggtagaacgtgagcgtgaaatcaacgca
tttgtgccagaagaattctgggatattcacgcaaataccaaaactaaagataagtcagat
ttcaaactgctggttgcgcagaaagatggcgttgcgtttaagcctgttaacgaaacagaa
accaaggcagccatttctgtccttgaaaacgcaagctacgaagtgtgtaagcgcgaagac
cgcccgacgaagagcaagccttctgcgccatacatcacatcaacattgcagcaagcggca
agtacccgtttaggttacggcgttaagaaaaccatgatgttagctcagcgtctgtatgaa
gcgggttacatcacttatatgcgtaccgactcgactaacttgagtgcggaagcagttgat
gctgttcgtgacttcattggttcagaatttggtgacaagtatcttccagctaagccactg
acgtacggcagcaaagaaggtgctcaagaagcgcacgaagcgattcgtccatctgatgta
tcagtgaaagcagaagacttgcaaggtgtagatgcggatgctcacaagctttactcactg
atctggaatcagttcgttgcgtgtcaaatgacacctgcagaatatgattcaaccacaatc
agcgtaaaagcggcggaatacacgctaaaagcgaaaggtcgtatccttaagtttgatggt
tggactcgcgtacagcgtccaatgggcaaaaacgaggacacaatccttcctgcggtacaa
cttggcgataagctaagcctagagtcacttgaccctaaacagcactttacaaagccacct
gcgcgctttacggaagcggcattggttaaagagttagaaaaacgaggcattggccgtcct
tcgacttacgcatcgatcatttctactattcaagaccgtggctacgtaaaagtagatcag
cgccgattctacgctgaaaaaatgggtgaaattgttactgaccgtcttgatgacagtttc
aacgatttaatgaactacgactttactgcgcgtatggaacagaaactggaccaaatcgca
gaaggtgaagtgaactggaaagcagtactcgacaacttctttgcggatttcactggtgac
ctagaaaaagccgagttagacgaatctgaaggtggtatgaagctaaaccacattgtgatg
acggatatcgagtgtccgacatgtggtcgccctatgggtattcgtaccgcttctacaggc
gtattcttaggctgttctggttacgcattgccacctaaagaacgttgtaagacaaccatt
aacttgggtgacgaagaaggtattatcaacgttttagaagaagacgttgaaacggctgct
cttcgtgcgaaaaaacgttgtccgatctgtgaaactgcgatggacgcgtacttaattgat
gacaagcgcaagatgcacgtttgtggtaacaacccgaactgtgaaggctatgttgttgag
tacggcgaattcaaagtgaaaggctacgatggccctgttgttgagtgtgacaagtgtggc
tcagacatggtgcttaagaacggccgctttggtaaatacatggattgtacgagtgaaact
tgtaagaacacccgtaaaatcctgaagaacggtgaagtagcgccacctaaagaagatcct
gtgcacttcccagaattgccatgtgaaaactcagatgcgtactttgtgcttcgtgatggt
gcttctggcctatttatggcggcaagcaacttccctaaatcgcgtgaaacaagagcacct
ctagtctctgaactggcgcgttttgaagagcgtctaccagagaagtttaagtacctaaca
acggctcctcaagaggatccagatggccgcccagccgtggttcgctttagccgtaagacg
aaagagaactatgttcgttcagaagacgacggtaaaccaagtggttggactgcactttac
gttgatggtaagtgggaagtcactgataaacgtaaaaaagcgaaagcttaa
DBGET
integrated database retrieval system
