Vibrio parahaemolyticus UCM-V493: VPUCM_2473
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Entry
VPUCM_2473 CDS
T03116
Name
(GenBank) Ribosomal large subunit pseudouridine synthase F
KO
K06182
23S rRNA pseudouridine2604 synthase [EC:
5.4.99.21
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vph03009
]
VPUCM_2473
Enzymes [BR:
vph01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.21 23S rRNA pseudouridine2604 synthase
VPUCM_2473
Ribosome biogenesis [BR:
vph03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VPUCM_2473
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
S4_2
Motif
Other DBs
NCBI-ProteinID:
AHJ00432
LinkDB
All DBs
Position
1:2661622..2662737
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AA seq
371 aa
AA seq
DB search
MSQDNAKRLNKFISETGFCSRRAADKLIEEGRVTINGKQPEMGTKVLPGDDVCVDGKPVA
SKEKPIYIALNKPTGITCTTERDIPGNIVDFIGHKKRIFPIGRLDKPSDGLIFLTNDGDI
VNKILRAGNNHEKEYVVRVDKPITDEFLKQMSSGVRILDTVTLPCKITKETKFSFRIVLT
QGLNRQIRRMCEALGYEVFKLRRVRIMNISLDGIPNGKWRYLTDDEVAEILAMCDGSVGT
EEASKTDSRGRNIRKATDAKLFDSREENQGSTARRNQKTRTFRGNNADEFRHAPNSKKGQ
QKRRQRDDENSRPAKEHYKAKPQGERAKPQGEHGRPQNKPQTPSKPKQHYVNPNTTSKPA
KRTSGTLSLKK
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagacaacgcgaaacgcttaaataaattcatcagcgaaacgggcttttgctcg
cgtcgcgctgccgataaactgatcgaagaaggtcgagtgaccattaacggcaaacagcca
gaaatgggcaccaaagtactacctggtgacgacgtttgtgttgatggcaagcctgtcgct
tcaaaagaaaagccgatatatatcgccctcaacaagccaacaggcatcacctgtacgact
gagcgtgatatccccggcaatatcgtcgatttcatcggtcacaaaaagcgtattttccca
attggtcgactcgacaaaccttcggatggtttgatcttcttgactaacgatggcgacatc
gtgaacaagattctgcgcgctggtaacaaccacgaaaaagaatacgtggtgcgtgtcgac
aagccgattacggacgaattcctaaaacagatgtcgagcggtgttcgaatcctcgatacc
gtaacgctcccttgtaaaattacgaaagaaaccaagttctctttccgtattgttttgacg
caaggcctaaaccgtcagatccgccgtatgtgtgaagcactcggctacgaagtatttaaa
cttcgccgcgtacgcatcatgaacatctctctagatggaattccaaatggtaaatggcgt
tacctaaccgatgacgaagtcgcagaaattttagcaatgtgcgatggctcagttggtacc
gaggaagcgtcaaagacagattctcgaggtcgtaatattcgtaaagcgactgatgcgaaa
ctgtttgatagccgagaagagaaccaaggttcgactgctcgtcgcaatcaaaaaacgcgc
accttccgtggtaataacgctgacgagttccgtcatgcacctaactctaaaaaaggccag
caaaagcgccgtcaacgtgatgatgaaaactcacgccctgcgaaagagcattacaaagcg
aaacctcaaggtgaacgcgcgaagccacaaggtgagcatggcagaccgcaaaacaagcct
caaacaccgagcaaaccgaagcagcattacgtcaatccgaatacgacaagtaaaccggca
aaacgcactagtggcacattaagcctcaaaaaataa
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