Vibrio parahaemolyticus UCM-V493: VPUCM_2919
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Entry
VPUCM_2919 CDS
T03116
Name
(GenBank) 3'-to-5' oligoribonuclease (orn)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VPUCM_2919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vph03019
]
VPUCM_2919
03009 Ribosome biogenesis [BR:
vph03009
]
VPUCM_2919
Messenger RNA biogenesis [BR:
vph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VPUCM_2919
Ribosome biogenesis [BR:
vph03009
]
Eukaryotic type
Pre-60S particles
RNases
VPUCM_2919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AHJ00878
LinkDB
All DBs
Position
1:complement(3172659..3173204)
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AA seq
181 aa
AA seq
DB search
MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDD
WCTNTHTASGLVERVRNSKISEQDAVVQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHM
PELEEYFHYRYLDVSTLKELTRRWKPEVLDGFSKQGTHLALDDIRESIAELKYYRETIFK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttagcgatcaaaacctaatttgggtggatttagagatgacagggcttgatcct
gaaacgcacaaaatcatcgaaattgcttctatcgtcacggatagcgaactgaatatttta
gctgaagggccagtgcttgccgtgcatcagccagaagaagagctagccaaaatggacgat
tggtgcaccaacacgcacacagctagcggtttggttgagcgcgttcggaacagcaaaatc
tctgagcaagatgccgtagtgcagaccatcgaatttttagaaaaatgggtaccaaaaggc
gtatcgccaatctgcggtaatagcatcggtcaggaccgtcgtttcttgtacaagcatatg
cctgaactggaagaatacttccactaccgttacttagatgtgagcacactaaaagagcta
actcgtcgttggaagccagaggtgctggacggtttctctaaacagggcacacacttagcg
ttggacgacatccgtgaatctattgcggagttaaagtactaccgcgaaacgatctttaag
atctaa
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