Vibrio parahaemolyticus UCM-V493: VPUCM_3068
Help
Entry
VPUCM_3068 CDS
T03116
Name
(GenBank) Diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph00300
Lysine biosynthesis
vph00470
D-Amino acid metabolism
vph01100
Metabolic pathways
vph01110
Biosynthesis of secondary metabolites
vph01120
Microbial metabolism in diverse environments
vph01230
Biosynthesis of amino acids
Module
vph_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
VPUCM_3068
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
VPUCM_3068
Enzymes [BR:
vph01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
VPUCM_3068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AHJ01027
LinkDB
All DBs
Position
1:complement(3343377..3344630)
Genome browser
AA seq
417 aa
AA seq
DB search
MDYFNYQDDGQLWAEDVPLQALAEQYGTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAV
KANSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGI
KCFNVESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAP
EVYQFAQSLPNLNVQGIDCHIGSQLTSIDPFIDATDRLLALIDDLKAQGINIRHLDVGGG
LGVVYRDELPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEHK
NFAIIDAAMNDLMRPALYQAWQDIVPVSPRNGEPQTYDLVGPICETGDFLGKDRALVLQE
GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMVDGNQSHLVRQREELTSLWQLEQILPE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttggattacttcaactatcaggatgatggccaactttgggccgaagacgtcccacttcaa
gctcttgccgagcaatatggcactcctctttacgtatattctcgagccacgctagagcgc
cactggaaggcgtttgatagtgctgtgggtcaacatcctcatcttgtgtgctacgcagta
aaagccaactcaaacttgggcgtactgaacgcgctggctcgtttgggttcgggttttgat
atcgtatctggtggtgaactagagcgtgtgattgctgcgggcggtgatgcgaagaaagtc
gtgttttctggggtgggtaaaacgccagcagaaatgaagcgcgcactagagcttggcatc
aagtgcttcaacgttgaatcagagccggaactcgaacgcttgaataaagttgcgggtgag
cttggtgtgattgcgcctatttcgctacgtattaacccagatgttgacgcgaaaactcac
ccttatatttcgactggtcttcgtgacaacaaatttggcattgcgtttgaccgcgcgcca
gaagtgtatcaattcgcccagagcttacctaatctgaatgtgcaaggtatcgactgccat
attggttctcagttaacgagcattgacccatttattgatgcaaccgaccgtttgctggct
ttgattgatgacctgaaagcacaaggcatcaacattcgtcacctcgacgttggtggtggt
ttaggcgtggtatatcgtgatgaattaccgcctcagccttctgattacgcgaaagcgttg
ttggggcgtcttgaaaatcatcaagacctagaactgatttttgaaccaggccgtgcgatt
gcagcaaatgccggtattttgctcactcgtgtggagttcctaaaacacaccgagcataaa
aactttgccatcattgatgcggcgatgaatgacttgatgcgtccagcactgtaccaagct
tggcaagatattgtgcctgtttcccctcgtaatggtgagccacaaacttacgatttggtt
ggcccgatttgtgaaactggtgacttcttgggtaaagatcgcgcgctcgttttgcaagaa
ggtgatctactcgcggttcgttcagcaggtgcctatggttttgtgatgtcttcgaactac
aatactcgtacccgagcggcagaagtaatggtggatggtaatcaaagccaccttgttcgc
cagcgtgaagagctgaccagtttgtggcagctggaacagattctaccggagtaa
DBGET
integrated database retrieval system