Vibrio parahaemolyticus UCM-V493: VPUCM_3081
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Entry
VPUCM_3081 CDS
T03116
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPUCM_3081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vph03021
]
VPUCM_3081
03019 Messenger RNA biogenesis [BR:
vph03019
]
VPUCM_3081
Transcription machinery [BR:
vph03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VPUCM_3081
Messenger RNA biogenesis [BR:
vph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VPUCM_3081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AHJ01040
LinkDB
All DBs
Position
1:complement(3360284..3361543)
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AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
DDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgaactgaagaacagacctgtgtctgaccttgtaaaactgggcgaaagc
ttaggactagagaacctagctcgcttaagaaaacaagacatcatcttcgcgattttaaaa
gcgcacgctaaaggcggcgaagacatctttggcgatggggttctggaaattctgcaagac
ggctttggtttcctacgcagtgcagacagttcgtaccttgctggtccggacgacatctac
gtatcaccaagtcagattcgtcgttttaacctacgtactggtgactcaattgctggtaaa
attcgcccaccaaaagacggtgaacgctactttgcccttctaaaagtcaatacagttaac
gacgacaaaccagacaacgctcgtaacaagatcctatttgaaaaccttacccctctgcac
gcgaatgaacgcatggtaatggagcgtggtaacggttctacagaagacatcacagcacgt
gttttagacttggcatcgcctatcggtaaaggtcaacgtggtctgattgttgctccgcca
aaagcgggtaagacaatgcttctgcaaaatatcgctcaaagcatcgcatacaaccatcca
gagtgtgagttgatggtacttcttatcgacgaacgtccagaagaagtaacagagatgcag
cgtctagttaaaggtgaagtagtcgcgtcgactttcgatgagccagcatctcgtcacgta
caagtggcagaaatggtaatcgagaaagcaaaacgtcttgttgaacacaagaaagacgtt
gttatcctgcttgactctatcactcgtctagctcgtgcttacaacaccgtagtgccttca
tcgggtaaagtactaacaggtggtgtggatgcaaacgcattgcaccgtcctaagcgtttc
ttcggtgcggcacgtaacgtagaagaaggcggcagcctaaccatcatcgcaacggcacta
gtcgatactggttctaagatggatgaagttatctacgaagagttcaagggtacaggtaac
atggaactgcacttgaaccgtaagattgctgagaagcgtgtattccctgcgattgacttc
aaccgctctggtacacgtcgtgaagagctactgacgaagactgacgaactacagaagatg
tggattctgcgtaagatcgttcacccaatgggcgaaatcgacgcaatggaattcctaatc
gataagctagcaatgacgaagacgaatgatgagttcttcgatgcgatgcgtcgtcagtaa
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