Vibrio parahaemolyticus UCM-V493: VPUCM_3106
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Entry
VPUCM_3106 CDS
T03116
Name
(GenBank) Thiamin biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph00730
Thiamine metabolism
vph01100
Metabolic pathways
vph01240
Biosynthesis of cofactors
Module
vph_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
VPUCM_3106
Enzymes [BR:
vph01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
VPUCM_3106
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
AHJ01065
LinkDB
All DBs
Position
1:complement(3387667..3389607)
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AA seq
646 aa
AA seq
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MSSRKQARLEAKQFIDTLSVQPYPNSTKVYIEGSRPDIRVPMREISLADSLIGGTKEAPI
FEPNEPVRVYDTSGVYTDPDYAIDLYSGLPKLREGWIEERNDTEILEDVSSVYAKERLDD
ETLDDLRYGNLPRIRRAKAGKCVTQLHYARKGIVTPEMEYIALRENMGRAQYRDDVLTQQ
HPGQSFGANLPKDITAEFVRKEVAEGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSS
VTSSIEEEVEKLVWATRWGGDTVMDLSTGRNIHETREWILRNSPVPIGTVPMYQALEKVN
GIAENLNWEVMRDTLIEQAEQGVDYFTIHAGLLLRYVPMTAKRVTGIVSRGGSIIAKWCL
AHHQESFLYTHFREICEICAKYDVALSLGDGLRPGSVADANDEAQFAELRTLGELTKIAW
EYDVQVIIEGPGHIPMHMIKENMDQQLEHCHEAPFYTLGPLTTDIAPGYDHITSGIGAAM
IGWYGCAMLCYVTPKEHLGLPNKEDVKTGMITYKLAAHAADLAKGHPGAQVRDNALSKAR
FEFRWEDQFNLALDPDTARAFHDETLPQESGKVAHFCSMCGPKFCSMKISQEVREYAKDT
EQVAADQAISIKMLDDPLEGMRKKSEEFRATGSELYHPAVHAEADE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtcgcaaacaagcgagactggaagcaaaacagtttattgatactctctcggta
cagccgtacccaaactcaaccaaagtgtatatagagggttctcgtcctgacatccgagtg
ccaatgcgtgaaatttctttggctgatagcctaattggtggcaccaaagaggctccaatt
tttgagcctaatgagcctgtacgtgtttatgatacctctggcgtatataccgatccagat
tacgctatcgacctttacagtggcttaccaaagcttagagaagggtggattgaagaacgc
aatgatactgaaatccttgaagatgtgagctctgtttacgcaaaagagcgtcttgacgat
gaaaccttagatgatttgcgttatggcaacttaccacgtattcgacgagctaaagcagga
aaatgcgtcactcaactacactatgctcgcaaaggcattgttactccggaaatggaatac
attgcactgcgtgagaacatgggtcgcgctcaatatcgcgatgacgtgctgactcagcag
catcccggccaaagcttcggtgcaaatctacctaaagacattactgcagaattcgttcgt
aaagaagtcgcagaaggtcgcgccatcattccttcgaatatcaatcatccagaatctgaa
ccaatgattattggccgtaacttcttagttaaggtgaatgccaatattggtaactcatcg
gtcacgtcttcaatcgaagaagaagtggaaaaacttgtctgggcgacacgctggggtggc
gataccgtgatggacctttctaccggccgtaacattcatgaaactcgcgaatggatttta
cgcaatagcccggtgccaattggtacggttcctatgtatcaggctttggagaaagtaaat
ggcattgctgagaacctgaattgggaagtcatgcgcgacacgttaatcgaacaagcagag
cagggtgttgattactttactatccatgctggtttactacttcgctatgttccaatgacg
gcgaaacgagtgacggggattgtttcgcgtggtggctcgattatcgctaagtggtgtcta
gcgcatcaccaagaaagcttcttatacacccatttccgcgagatctgtgaaatttgtgcg
aagtacgatgtcgctctatctcttggtgatggcttgcgtcctggctcggttgcagacgcg
aacgatgaagcgcaatttgcagagctgcgtacgctcggcgagttgacgaaaatcgcatgg
gaatatgatgtacaggtcatcattgaaggccctggccatattccaatgcacatgatcaaa
gagaatatggaccaacagttggaacactgtcatgaagcgccgttctataccttgggtcct
ctaacgacagatatcgctccgggttatgaccacattacatccggtattggcgcggcgatg
attggttggtatggctgcgctatgttgtgttacgtgacccctaaggagcacttggggctt
ccaaataaagaagacgttaaaaccggtatgatcacctacaagctagctgcgcatgctgcg
gatttagcaaaagggcatccgggagcacaagttcgtgataatgccttatcaaaggcgcgt
tttgaattccgctgggaagaccaatttaacctcgctttagaccccgatacggcacgtgca
tttcatgatgaaacgctaccgcaagagtctggaaaagtagcgcacttctgctcaatgtgc
ggccctaaattctgctcaatgaagatttctcaagaagtcagggagtatgccaaagataca
gagcaagttgccgcggatcaggcgatttctatcaagatgttagatgacccgctggaaggc
atgcgtaagaagtctgaagagtttcgtgcgacaggctcggagctttatcacccagccgtg
cacgccgaggcggatgagtaa
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