Vagococcus penaei: BW732_04155
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Entry
BW732_04155 CDS
T04715
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vpi
Vagococcus penaei
Pathway
vpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW732_04155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpi03019
]
BW732_04155
Messenger RNA biogenesis [BR:
vpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BW732_04155
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AQP53499
UniProt:
A0A1Q2D562
LinkDB
All DBs
Position
complement(869984..871657)
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AA seq
557 aa
AA seq
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MSQIKIVPLGGVRENGKSIYVVEVEDEIFIMDCGLKYPEYEQLGIDMVIPDFSYLVENKD
KIAGVFLSHGHADAIGALPYLLEQIDVPVFGTELTIELAKLNVNNYPNTKDYTDFHVVNE
FTEIEFEKAVISFFRTTHTIPDSIGVAVKTDEGTIVYTGDFKFDQSASKEYQTDFSRLAD
IGKEGVLALLSDSTNAESNALIASENQTADEIYETLRYWDGRIIVASVASNIQRIQQILN
AAHKSFRQVVLTGKDLEQIVKTAIRLGKLSLPSDDLIITEKEMKKKNPDELLILETGRMG
EPLKSLQKMASRRHRSVNITEGDLVYITTTPSSAMETTMAKTEDMVYRAGGTVKTILDNI
HVSGHGNQNDLKLMINLMKPKYFVPVQGEYRVLAAHADLAHEVGMSYKDIFITGCGDTLE
LEKGRLRMTGSVDADNVLIDGLGVGDIGNIVLRDRKVLSDDGIFIVAVTISRRKKKIISS
PRITSRGFVYLKASNDLIAESTQIVEKVVLDNLDKQEFDWGILKQEIRDDLSKYLYAQTK
RKPVILPVIMEASQKKK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcagataaaaatagttcctctaggcggcgttagagaaaatggaaaaagtatttac
gttgttgaagtagaggacgaaatattcatcatggattgtggcttgaaatatccagagtat
gaacaattaggtattgatatggttattcctgatttttcttacttagttgaaaataaagat
aagatagctggtgtctttttaagtcatggacatgcggacgctattggtgcgttaccgtat
ttacttgagcaaattgatgttcctgtttttgggacagaactaacgattgagttagctaag
ttaaatgttaataattatccaaatacaaaagattataccgatttccatgtcgttaatgaa
tttacagaaattgagtttgaaaaagctgtgattagcttttttagaacgacacatactatt
ccagattcaattggtgttgcagtaaaaacggatgaaggtacaattgtctacactggtgat
tttaagtttgatcaaagtgcaagtaaagaataccaaacggatttttcgcgtttagcagat
attggtaaagaaggcgtactagctttgttaagtgattccacaaatgctgaaagtaatgcc
ttaattgcttctgaaaatcaaacagccgatgaaatctatgagaccctccgctattgggat
ggaagaattattgttgcaagtgtcgcaagcaatattcagcgaatccaacaaattttaaat
gcggcacataaatcgtttcgtcaggttgttttaactggaaaagacctagagcaaattgtt
aaaacagcgattcgtttaggtaaattaagcttacctagcgatgatttaatcattactgaa
aaagaaatgaagaaaaaaaatccggatgaattattgattttagaaacaggtcggatgggc
gagccattaaaatcattacaaaaaatggctagtcgtcgtcataggtcagtgaatattact
gaaggtgacttagtatatattactacaacaccatcaagtgctatggaaacaaccatggca
aaaaccgaagatatggtctaccgtgctggtgggacagtgaaaactatcttagataatatt
cacgtatcaggtcatggtaatcagaatgacttaaaattaatgataaatctaatgaaaccg
aaatattttgtgccagtacaaggtgaatatcgcgtactagctgcccatgctgatttagct
catgaagtgggaatgtcttataaagatatttttattaccggttgtggtgatacgctagaa
ttagaaaaaggacgtttaagaatgactggttctgtggatgcagataatgtcttaattgat
ggtcttggtgtgggtgatattggaaatattgttttacgtgaccgaaaagtactatcggat
gatggtatctttattgtggctgtgacaattagccgccggaaaaagaaaattatttctagt
ccccgaattacctcacgcggctttgtttacttaaaagcaagtaatgatttaattgctgaa
agtacacaaattgtggaaaaagttgttttagataaccttgacaaacaagaatttgattgg
ggtatcttaaagcaagaaatacgggatgatttaagtaaatacctttatgcacaaacaaaa
cgtaaaccggttattttaccagttattatggaagcgagtcaaaagaaaaaataa
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