Vagococcus penaei: BW732_07360
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Entry
BW732_07360 CDS
T04715
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpi
Vagococcus penaei
Pathway
vpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW732_07360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpi03019
]
BW732_07360
03009 Ribosome biogenesis [BR:
vpi03009
]
BW732_07360
Enzymes [BR:
vpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BW732_07360
Messenger RNA biogenesis [BR:
vpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BW732_07360
Ribosome biogenesis [BR:
vpi03009
]
Prokaryotic type
rRNA helicases
BW732_07360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
PYRIN
CMS1
Motif
Other DBs
NCBI-ProteinID:
AQP54050
UniProt:
A0A1Q2D6V6
LinkDB
All DBs
Position
1523520..1525076
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AA seq
518 aa
AA seq
DB search
MKFSELKLDEVLLKSVEAIGFEEATPIQSETIPLALEGRDVIGQAQTGTGKTAAFGLPML
QKIDTENHALQGLVIAPTRELAIQTQEEIYRLGKDKKIKVQAVYGGADIGRQIRALKNKP
HIIVGTPGRLLDHINRRTLKLETIETLVLDEADEMLNMGFLEDIESIISKIPASRQTLLF
SATMPDSIKRIGVKFMNNPEHVKIKAKEMTANLIDQYYVRCKEFEKFDTMTRLFDIQNPE
LTIVFGRTKRRVDELARGLEMRGYKAEGIHGDLPQHKRMSILRAFKNGELDILVATDVAA
RGLDISGVSHVYNYDIPQDPESYVHRIGRTGRAGKEGMSITFVTPNEMSYLHVIEELTKK
RMTTLRPPSKTEAFKGQLGTALKEIEELLAANGLEKYQEAASDLLENYSAENIAALLIKQ
ISKDDAAEVPVKITPERPLPSQKRGGNRGGSRGGNSNNRGGNRGGSRGGNRDNRGAKSDN
WRNKEQGNKKRNYKGKDTKPAGKDKSRGFVIRNNNESN
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttagtgaattaaagttagatgaagtactgttaaaatcggttgaagcaatcggg
tttgaggaagcgacaccaattcaaagtgaaacaattccattggcattagaaggaagagac
gtaattgggcaagctcaaacaggaactggtaaaacagcagcgtttggtttaccaatgtta
caaaaaattgacactgagaaccatgcgttacaaggactagttattgctccaacaagagaa
ttagctattcagacacaagaagaaatctaccgtttaggtaaagataaaaaaattaaagtt
caagccgtttatggtggagccgatattggtcgacaaattcgtgcattaaaaaataaacca
cacattattgttggaacaccaggtcgattacttgatcatattaatcgccgcacattaaaa
ttagaaaccattgaaacactagtcttagatgaagcagacgaaatgttaaatatgggattc
ttagaagatattgaatcaattatttctaaaataccagcaagccgtcaaacattattattc
tcagcaactatgccagatagtattaaacgtatcggtgttaaatttatgaacaatcctgag
cacgttaagattaaagcaaaagaaatgactgctaacttaattgatcagtattatgttcgt
tgtaaagagtttgaaaaatttgatacaatgacacgtttattcgatattcaaaatccagaa
ttaactattgtttttggtcgtacaaaacgtcgcgttgacgaattagctcgtggattagag
atgcgtggatataaagcagagggcattcatggtgatttaccacagcataaacgtatgagc
attttacgcgcgtttaaaaatggcgaattagatattttagttgcaacagatgtagctgct
cgtggattagatatttccggagtaagccatgtttataactatgatatcccacaagatcca
gaaagttatgttcaccgtattggtcgaacaggacgtgctggtaaagaaggtatgtcaatt
acatttgtgacaccaaatgaaatgagctacttacacgtaattgaagaattgacgaaaaaa
cgtatgacaacattacgtccgccgtcaaaaacagaagcattcaaaggccaacttggaaca
gctctaaaagaaatcgaagaattattagcagcgaatggtttagaaaaataccaagaagca
gctagtgatttactagaaaattattcagcagaaaatattgcggctttattaatcaaacaa
atttctaaagatgatgcagctgaagtaccagttaaaattactccagaacgtccattaccg
tctcaaaaacgtggtggcaatcgtggtggtagccgtggtggcaacagcaataaccgtggt
ggcaatcgtggtggtagtcgtggtggcaaccgtgataatcgtggtgctaaaagtgataac
tggcgcaataaagaacaaggaaataaaaaacgtaattataaagggaaagacacaaaacca
gcaggtaaagataaaagccgtggctttgtcatccgtaataataacgaaagtaactag
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