Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_02255
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Entry
M636_02255 CDS
T02760
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpk03016
]
M636_02255
Enzymes [BR:
vpk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M636_02255
Transfer RNA biogenesis [BR:
vpk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M636_02255
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AGQ97270
LinkDB
All DBs
Position
II:complement(466139..468145)
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCIHGDKV
VAIIRTENEREVAEPQELIEQSLTRFIGRVKMFKGKLNVVPDHPQLKKLSLKAKLKKGLK
PDNFAEGDWVVAHLVRHPLKGDNTFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGI
ENWELKDDADLERIDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIADPTAYIT
PEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGEIRPAICCTVTVSKDGVIGD
DIKFFAANIKSHARLAYDHVSDWLENGNSDAWQPSEEIATIVRDLYEFSLARAEWREKNA
VVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLREKFETGVFNT
HAGLKPEKIEEVVQLVNPEGTLEFTAESIATLEGFAALRRWLAVQETSYLDNRIRKFQAY
SEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILDKEPVQKPDDQVGEELAL
HRKHHKIAERNVSDWLYARTLADEPSKQTCFTGEIFDINRAGARVRLLENGAAAFIPGAL
ILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLADVNQENRSLVAKPTQVFADQPAAQ
TEQTVSEE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctattagcccagcttaagcagcaaatccaagaaaacctgcct
aaaaaagaaggttcaatcaaagcaacagataaaggctttggtttcctggaagtggacagc
aagaccagcttcttcatcccaccagcgtacatgaaaaagtgcattcacggcgacaaagtc
gtggccatcatccgtactgaaaatgaacgtgaagtcgcagaaccacaagagctgatcgaa
caatctcttactcgctttatcggtcgagtaaagatgttcaaaggcaagctaaatgtcgtg
cctgaccatcctcaactaaagaaattgtctctaaaagcgaaactgaagaaaggtttaaag
cctgacaacttcgcagaaggtgattgggttgtagcacatcttgttcgtcacccgctaaaa
ggcgacaacacgttcttcgttgaaatttcagagaaaatcactgacgctgatgacaaaatc
gcaccgtggtgggtaacgctagcgcaaaacgatctaccaaactcagaacctgctggcatt
gagaactgggaattaaaagatgacgccgatctagagcgcatcgacatgactcatgttcct
ttcgtcacaatcgatggtgaatcaaccaaagatatggatgacgcgttgtacgcgaagaaa
acagaatctggtgattttgagttaactatcgcgattgctgacccaactgcgtacatcaca
cctgaagacgaaatggataaagtcgcgcgtgagcgtggttacaccatttatctaccaggc
cgtaacatcccgatgttacctcgcgacctagcggacaacctatgttctctaattgaaggc
gaaatccgcccagcaatttgctgcaccgtaacagtgagcaaagacggtgtgattggtgac
gatatcaaattcttcgctgcaaacatcaagtcacacgcgcgcctagcatacgatcacgtt
tctgattggctagaaaacggcaactctgatgcatggcaaccttcagaagaaatcgcaact
atcgtacgtgatctatacgagttttctctagctcgcgcagaatggcgtgagaaaaacgca
gtcgtattcccagaccgtcctgactaccgttttgagctaagtgaagacaatgacgttatc
gcgattcacgctgatatgcgccgcagtgcaaaccgtcttgttgaagaatcgatgatcaca
gcgaacatctgtgcaggccgtacactgcgtgaaaaattcgaaactggtgtattcaacact
cacgcaggtttgaaaccagagaaaatcgaagaagttgtgcaactcgttaaccctgagggt
acgctagaattcacagcagaatcgattgcaacgcttgaaggctttgcggctctacgtcgt
tggttagcggttcaagagacatcttacctagacaaccgcattcgtaagttccaagcatac
agtgaagtgggtaaccaacctcttcctcattacgcgatgggtctagacatttatgcgact
tggacatccccaattcgtaaatacggcgatatgatcaaccaccgtatgctaaaggcggtg
attctagataaagaaccagtacaaaaacctgacgatcaagtgggtgaagaactggcactg
caccgtaagcaccacaaaattgcagagcgtaacgtgtctgattggctatacgcacgtact
cttgcggatgaaccaagcaagcaaacttgtttcacaggtgagattttcgatattaatcgt
gctggtgcacgtgttcgacttctcgaaaatggtgcagcagcctttattcctggtgccctg
attcttgataataaagaacgaattgagtgcaatggcgacaacggcacaatctctatcgat
aaagaggtggtgtacaaactgggtgacacattggaaatcgttcttgcggacgttaaccaa
gaaaaccgcagtttagttgcaaagccaacacaggtatttgctgatcaaccagcagcacaa
acagaacaaactgtaagtgaagaataa
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