Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_02260
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Entry
M636_02260 CDS
T02760
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M636_02260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpk03019
]
M636_02260
03009 Ribosome biogenesis [BR:
vpk03009
]
M636_02260
Enzymes [BR:
vpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M636_02260
Messenger RNA biogenesis [BR:
vpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M636_02260
Ribosome biogenesis [BR:
vpk03009
]
Prokaryotic type
rRNA helicases
M636_02260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
AGQ96242
LinkDB
All DBs
Position
II:468525..470456
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AA seq
643 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLDQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAASKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRREGGFRGNREGGNRGGERREGGRREGGFRGN
RDGNREGNREGGERRFDRNRGGDHRGNYRGERGHGRGRRTQDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaagctagatcttgatcaacgtaaaccacaagcaatcgttctt
gctccaactcgtgagctagcgatccaggttgcggctgaaatgaaaaaccttggtaaaaac
atcaagggccttaaagttctagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gctcttaaaaacggtgcacacgttgttgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgtctacatcttgacgaagtgaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctcctgaatca
gcacaacgcgttctattttctgcaactatgccaccaatgctgaaaaacattgttgagcgc
ttcctacgtgatcctgtaactgttgacgttgctggtaaaaaccacactgtagacaaagtt
caacaacagttctgggtagtgaaaggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacaccgagcgt
ctagctgactggctatctgcacgtggcttcaaagctgctgcactgcacggtgacattcct
cagtccctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtg
gcaactgacgttgttgcacgtggtcttgatgttccacgtatcactcacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgcagga
cgtaaaggtaaagcgatccttctagttcgcactaaccaaatccgcatgcttcgcactatc
gagcgcgtgactaagtcatctatggaagaaatccaacttcctctacgtgaccaagttgca
gaagctcgtctaaacaagctagcggctgaactggaagctgagaaagagcacaaagcacta
gacaagttcgcagagctagtagagaaactacaaacttctctagaaatcgaccctgcgatg
cttgctgcaatgcttcttaagcgtcaacaaggtaaacgtcctctgttctacattggcgaa
gacccaatggttgaagcaattgagcgtgacaagcagcgtcgtaaagaacgccgtgaaggt
ggtcgtgaaggcggtcgtagcttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagatatcgttggcgctctagcaaacgaactaggc
ctaggtaaaggttctatcggtgcgatcaagctagcgcaaggtcacacattcgttcagcta
ccaaaagcaatgacttctgaagctgcgagcaagctaagcaaactgcgtatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgacgatttccgcgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgaaggtggtttccgtggtaaccgcgaaggt
ggcaaccgtggtggtgagcgtcgtgaaggcggtcgtcgtgaaggtggcttccgtggtaac
cgtgacggcaaccgcgaaggtaaccgtgaaggtggcgaacgtcgtttcgatcgtaaccgt
ggtggtgatcaccgtggtaactaccgtggcgaacgtggtcacggccgtggccgtcgcact
caagacgcataa
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